Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1547 | 3' | -57.4 | NC_001347.2 | + | 208375 | 1.1 | 0.003136 |
Target: 5'- cCCGCGGCCAGCAACCCGAUCUUCGGAu -3' miRNA: 3'- -GGCGCCGGUCGUUGGGCUAGAAGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 173692 | 0.67 | 0.903695 |
Target: 5'- aCCGCGGUggCGGCGGugguUCCGGUacgCGGAa -3' miRNA: 3'- -GGCGCCG--GUCGUU----GGGCUAgaaGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 173429 | 0.68 | 0.856754 |
Target: 5'- aCGUGGCCAGCcGCaaCGGUCUguucgccgUGGAg -3' miRNA: 3'- gGCGCCGGUCGuUGg-GCUAGAa-------GCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 171326 | 0.66 | 0.930928 |
Target: 5'- -gGCGGCCuGUcuCCCGGcggCUcUCGGAc -3' miRNA: 3'- ggCGCCGGuCGuuGGGCUa--GA-AGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 135261 | 0.67 | 0.909574 |
Target: 5'- aCGCccagGGCCAGCAAgCCGcgacgguUCgggCGGAg -3' miRNA: 3'- gGCG----CCGGUCGUUgGGCu------AGaa-GCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 126016 | 0.69 | 0.825762 |
Target: 5'- cUCGCGGCgGGUGgcGCCCG-UCUUCGc- -3' miRNA: 3'- -GGCGCCGgUCGU--UGGGCuAGAAGCcu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 124349 | 0.67 | 0.915238 |
Target: 5'- aCCGCGGCCGGCGugaCGGUggucaacaCUUCGc- -3' miRNA: 3'- -GGCGCCGGUCGUuggGCUA--------GAAGCcu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 116889 | 0.66 | 0.935722 |
Target: 5'- cCCGCGcGCCccccgGGCAACCCGccgccggCUaCGGc -3' miRNA: 3'- -GGCGC-CGG-----UCGUUGGGCua-----GAaGCCu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 113937 | 0.71 | 0.709791 |
Target: 5'- cCCGCGGCaaCAGCAAUUCGGccUCgucCGGAg -3' miRNA: 3'- -GGCGCCG--GUCGUUGGGCU--AGaa-GCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 113210 | 0.67 | 0.88479 |
Target: 5'- aCUGCGGCU-GUcGCCCGAacgcUCggCGGAc -3' miRNA: 3'- -GGCGCCGGuCGuUGGGCU----AGaaGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 105989 | 0.66 | 0.940299 |
Target: 5'- gCGCGGCCgcAGCAcgugucGCCCGAcgacgagaUCgcgCGGc -3' miRNA: 3'- gGCGCCGG--UCGU------UGGGCU--------AGaa-GCCu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 101256 | 0.68 | 0.864054 |
Target: 5'- gUGUGGCCAGCGGCgCCGGUUUg---- -3' miRNA: 3'- gGCGCCGGUCGUUG-GGCUAGAagccu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 100196 | 0.66 | 0.920151 |
Target: 5'- gCCGCGGCCucgcccaGGUAGCCgGAgacggCGGu -3' miRNA: 3'- -GGCGCCGG-------UCGUUGGgCUagaa-GCCu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 99551 | 0.67 | 0.88479 |
Target: 5'- gCGCGGCagugaCAGCuuguGACCCGcgCUcgucgUCGGGa -3' miRNA: 3'- gGCGCCG-----GUCG----UUGGGCuaGA-----AGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 98051 | 0.68 | 0.849269 |
Target: 5'- gCCGCGGCggCAGCGGCCgCGG-CUUCc-- -3' miRNA: 3'- -GGCGCCG--GUCGUUGG-GCUaGAAGccu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 88637 | 0.69 | 0.809278 |
Target: 5'- aCCGCGGCUugagcGGCGGCCUGcgcagCUUCGc- -3' miRNA: 3'- -GGCGCCGG-----UCGUUGGGCua---GAAGCcu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 85021 | 0.67 | 0.882129 |
Target: 5'- aCCGcCGGCCAGCAACUCGcagcccaguucgCUUuccucgcgcucgCGGAa -3' miRNA: 3'- -GGC-GCCGGUCGUUGGGCua----------GAA------------GCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 82221 | 0.66 | 0.935722 |
Target: 5'- uCCGCGGUaugcgugaccaCAcGCGGCUCGugcaCUUCGGGa -3' miRNA: 3'- -GGCGCCG-----------GU-CGUUGGGCua--GAAGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 80759 | 0.67 | 0.88479 |
Target: 5'- gCCGCGGgCGGCGuggagggagaaACCCGAUCa----- -3' miRNA: 3'- -GGCGCCgGUCGU-----------UGGGCUAGaagccu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 78431 | 0.66 | 0.935722 |
Target: 5'- aCC-CGGcCCGGCGgcGCCCGAg---CGGGa -3' miRNA: 3'- -GGcGCC-GGUCGU--UGGGCUagaaGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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