Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1547 | 3' | -57.4 | NC_001347.2 | + | 71661 | 0.77 | 0.386342 |
Target: 5'- gCCGCGGCCGGCGGCCUcuuGUUUUCGu- -3' miRNA: 3'- -GGCGCCGGUCGUUGGGc--UAGAAGCcu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 44382 | 0.66 | 0.932872 |
Target: 5'- gCCGgGGCUucuggagaacgccggGGCAGCagCGAUCUggGGAa -3' miRNA: 3'- -GGCgCCGG---------------UCGUUGg-GCUAGAagCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 39497 | 0.68 | 0.87671 |
Target: 5'- cCCGCGGCC-GCGACCaagggg-CGGGg -3' miRNA: 3'- -GGCGCCGGuCGUUGGgcuagaaGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 38095 | 0.67 | 0.909574 |
Target: 5'- uCCGCcGCCAGCGgguacacguGCCCG-UCcagCGGGc -3' miRNA: 3'- -GGCGcCGGUCGU---------UGGGCuAGaa-GCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 37077 | 0.66 | 0.939851 |
Target: 5'- gCCGUGGCCuGUGGCCCGAagauguacacauaUCga-GGu -3' miRNA: 3'- -GGCGCCGGuCGUUGGGCU-------------AGaagCCu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 25314 | 0.72 | 0.661523 |
Target: 5'- aCC-CGGCUGGCGACCCGcaGUCUggcUUGGGu -3' miRNA: 3'- -GGcGCCGGUCGUUGGGC--UAGA---AGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 19651 | 0.68 | 0.840829 |
Target: 5'- uCCGCGGUCAGguccagaUAGCCCGGUCggUCu-- -3' miRNA: 3'- -GGCGCCGGUC-------GUUGGGCUAGa-AGccu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 920 | 0.73 | 0.61271 |
Target: 5'- gUCGCGGCCGcGgGGCCgGAgggcCUUCGGGg -3' miRNA: 3'- -GGCGCCGGU-CgUUGGgCUa---GAAGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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