Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1547 | 3' | -57.4 | NC_001347.2 | + | 100196 | 0.66 | 0.920151 |
Target: 5'- gCCGCGGCCucgcccaGGUAGCCgGAgacggCGGu -3' miRNA: 3'- -GGCGCCGG-------UCGUUGGgCUagaa-GCCu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 171326 | 0.66 | 0.930928 |
Target: 5'- -gGCGGCCuGUcuCCCGGcggCUcUCGGAc -3' miRNA: 3'- ggCGCCGGuCGuuGGGCUa--GA-AGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 124349 | 0.67 | 0.915238 |
Target: 5'- aCCGCGGCCGGCGugaCGGUggucaacaCUUCGc- -3' miRNA: 3'- -GGCGCCGGUCGUuggGCUA--------GAAGCcu -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 135261 | 0.67 | 0.909574 |
Target: 5'- aCGCccagGGCCAGCAAgCCGcgacgguUCgggCGGAg -3' miRNA: 3'- gGCG----CCGGUCGUUgGGCu------AGaa-GCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 38095 | 0.67 | 0.909574 |
Target: 5'- uCCGCcGCCAGCGgguacacguGCCCG-UCcagCGGGc -3' miRNA: 3'- -GGCGcCGGUCGU---------UGGGCuAGaa-GCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 173692 | 0.67 | 0.903695 |
Target: 5'- aCCGCGGUggCGGCGGugguUCCGGUacgCGGAa -3' miRNA: 3'- -GGCGCCG--GUCGUU----GGGCUAgaaGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 113210 | 0.67 | 0.88479 |
Target: 5'- aCUGCGGCU-GUcGCCCGAacgcUCggCGGAc -3' miRNA: 3'- -GGCGCCGGuCGuUGGGCU----AGaaGCCU- -5' |
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1547 | 3' | -57.4 | NC_001347.2 | + | 208375 | 1.1 | 0.003136 |
Target: 5'- cCCGCGGCCAGCAACCCGAUCUUCGGAu -3' miRNA: 3'- -GGCGCCGGUCGUUGGGCUAGAAGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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