miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1547 5' -53.7 NC_001347.2 + 191008 0.66 0.988582
Target:  5'- gCUUCGUccucgccgGGUAGCGCUGCCUc- -3'
miRNA:   3'- gGAGGCAucua----CUAUCGCGGCGGAuc -5'
1547 5' -53.7 NC_001347.2 + 136845 0.66 0.988156
Target:  5'- gCUCCGccccuacggGGCGUCGCCUAGc -3'
miRNA:   3'- gGAGGCaucuacua-UCGCGGCGGAUC- -5'
1547 5' -53.7 NC_001347.2 + 81619 0.66 0.987116
Target:  5'- --gCCGUGGcauUGAgacgcacGGCGCCGCCg-- -3'
miRNA:   3'- ggaGGCAUCu--ACUa------UCGCGGCGGauc -5'
1547 5' -53.7 NC_001347.2 + 963 0.66 0.987116
Target:  5'- uCCUCCuucuucuuguGUGccGAUGggAGCGCCGUCa-- -3'
miRNA:   3'- -GGAGG----------CAU--CUACuaUCGCGGCGGauc -5'
1547 5' -53.7 NC_001347.2 + 86562 0.66 0.987116
Target:  5'- gCC-CCacauGAUGAUGGCGgCGCCUc- -3'
miRNA:   3'- -GGaGGcau-CUACUAUCGCgGCGGAuc -5'
1547 5' -53.7 NC_001347.2 + 142246 0.66 0.983753
Target:  5'- uUCUUCGUGGAUGGcugcgaGGCGCUgGCCg-- -3'
miRNA:   3'- -GGAGGCAUCUACUa-----UCGCGG-CGGauc -5'
1547 5' -53.7 NC_001347.2 + 134389 0.67 0.975091
Target:  5'- cCCUCCuccaa-GAUGGCGCCGCUcGGc -3'
miRNA:   3'- -GGAGGcaucuaCUAUCGCGGCGGaUC- -5'
1547 5' -53.7 NC_001347.2 + 163535 0.67 0.972748
Target:  5'- gUUCUGUAGGcgcugcugcacuucgGGUAGCugcagGCCGCCUAGc -3'
miRNA:   3'- gGAGGCAUCUa--------------CUAUCG-----CGGCGGAUC- -5'
1547 5' -53.7 NC_001347.2 + 195438 0.67 0.972479
Target:  5'- aCC-CCGUGGAUc--AGcCGCCGCCUc- -3'
miRNA:   3'- -GGaGGCAUCUAcuaUC-GCGGCGGAuc -5'
1547 5' -53.7 NC_001347.2 + 67283 0.68 0.966672
Target:  5'- uCCUCCGacugcGGUGGUGccucCGCCGCCUc- -3'
miRNA:   3'- -GGAGGCau---CUACUAUc---GCGGCGGAuc -5'
1547 5' -53.7 NC_001347.2 + 68741 0.69 0.944205
Target:  5'- --gCCGUGGA-GcgAGUGCCGCCg-- -3'
miRNA:   3'- ggaGGCAUCUaCuaUCGCGGCGGauc -5'
1547 5' -53.7 NC_001347.2 + 80956 0.7 0.901567
Target:  5'- aCC-CCGUGGAgcgGAcuaccaccGGCGCCGCCg-- -3'
miRNA:   3'- -GGaGGCAUCUa--CUa-------UCGCGGCGGauc -5'
1547 5' -53.7 NC_001347.2 + 2086 0.71 0.867579
Target:  5'- gCCUCCGcAGccGuacGGCGCCGCCggcgGGg -3'
miRNA:   3'- -GGAGGCaUCuaCua-UCGCGGCGGa---UC- -5'
1547 5' -53.7 NC_001347.2 + 147925 0.72 0.852517
Target:  5'- gCCUCCGUGGucGAaGGCGuuGCCa-- -3'
miRNA:   3'- -GGAGGCAUCuaCUaUCGCggCGGauc -5'
1547 5' -53.7 NC_001347.2 + 162543 0.72 0.82849
Target:  5'- uUCUCgGUgcGGGUGAcAGCGCCGCuCUAc -3'
miRNA:   3'- -GGAGgCA--UCUACUaUCGCGGCG-GAUc -5'
1547 5' -53.7 NC_001347.2 + 85318 0.73 0.77598
Target:  5'- gCC-CCGcAGGUGGUgaucAGCGCCGCCg-- -3'
miRNA:   3'- -GGaGGCaUCUACUA----UCGCGGCGGauc -5'
1547 5' -53.7 NC_001347.2 + 78980 0.74 0.728725
Target:  5'- uCCUUCGgcgAGAUcGUGGcCGCCGCCUAc -3'
miRNA:   3'- -GGAGGCa--UCUAcUAUC-GCGGCGGAUc -5'
1547 5' -53.7 NC_001347.2 + 69117 0.75 0.689414
Target:  5'- aCCUCUGU-GcgGAcAGCGCCGCCa-- -3'
miRNA:   3'- -GGAGGCAuCuaCUaUCGCGGCGGauc -5'
1547 5' -53.7 NC_001347.2 + 208418 1.1 0.006595
Target:  5'- cCCUCCGUAGAUGAUAGCGCCGCCUAGc -3'
miRNA:   3'- -GGAGGCAUCUACUAUCGCGGCGGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.