Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1547 | 5' | -53.7 | NC_001347.2 | + | 191008 | 0.66 | 0.988582 |
Target: 5'- gCUUCGUccucgccgGGUAGCGCUGCCUc- -3' miRNA: 3'- gGAGGCAucua----CUAUCGCGGCGGAuc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 136845 | 0.66 | 0.988156 |
Target: 5'- gCUCCGccccuacggGGCGUCGCCUAGc -3' miRNA: 3'- gGAGGCaucuacua-UCGCGGCGGAUC- -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 81619 | 0.66 | 0.987116 |
Target: 5'- --gCCGUGGcauUGAgacgcacGGCGCCGCCg-- -3' miRNA: 3'- ggaGGCAUCu--ACUa------UCGCGGCGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 963 | 0.66 | 0.987116 |
Target: 5'- uCCUCCuucuucuuguGUGccGAUGggAGCGCCGUCa-- -3' miRNA: 3'- -GGAGG----------CAU--CUACuaUCGCGGCGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 86562 | 0.66 | 0.987116 |
Target: 5'- gCC-CCacauGAUGAUGGCGgCGCCUc- -3' miRNA: 3'- -GGaGGcau-CUACUAUCGCgGCGGAuc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 142246 | 0.66 | 0.983753 |
Target: 5'- uUCUUCGUGGAUGGcugcgaGGCGCUgGCCg-- -3' miRNA: 3'- -GGAGGCAUCUACUa-----UCGCGG-CGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 134389 | 0.67 | 0.975091 |
Target: 5'- cCCUCCuccaa-GAUGGCGCCGCUcGGc -3' miRNA: 3'- -GGAGGcaucuaCUAUCGCGGCGGaUC- -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 163535 | 0.67 | 0.972748 |
Target: 5'- gUUCUGUAGGcgcugcugcacuucgGGUAGCugcagGCCGCCUAGc -3' miRNA: 3'- gGAGGCAUCUa--------------CUAUCG-----CGGCGGAUC- -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 195438 | 0.67 | 0.972479 |
Target: 5'- aCC-CCGUGGAUc--AGcCGCCGCCUc- -3' miRNA: 3'- -GGaGGCAUCUAcuaUC-GCGGCGGAuc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 67283 | 0.68 | 0.966672 |
Target: 5'- uCCUCCGacugcGGUGGUGccucCGCCGCCUc- -3' miRNA: 3'- -GGAGGCau---CUACUAUc---GCGGCGGAuc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 68741 | 0.69 | 0.944205 |
Target: 5'- --gCCGUGGA-GcgAGUGCCGCCg-- -3' miRNA: 3'- ggaGGCAUCUaCuaUCGCGGCGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 80956 | 0.7 | 0.901567 |
Target: 5'- aCC-CCGUGGAgcgGAcuaccaccGGCGCCGCCg-- -3' miRNA: 3'- -GGaGGCAUCUa--CUa-------UCGCGGCGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 2086 | 0.71 | 0.867579 |
Target: 5'- gCCUCCGcAGccGuacGGCGCCGCCggcgGGg -3' miRNA: 3'- -GGAGGCaUCuaCua-UCGCGGCGGa---UC- -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 147925 | 0.72 | 0.852517 |
Target: 5'- gCCUCCGUGGucGAaGGCGuuGCCa-- -3' miRNA: 3'- -GGAGGCAUCuaCUaUCGCggCGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 162543 | 0.72 | 0.82849 |
Target: 5'- uUCUCgGUgcGGGUGAcAGCGCCGCuCUAc -3' miRNA: 3'- -GGAGgCA--UCUACUaUCGCGGCG-GAUc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 85318 | 0.73 | 0.77598 |
Target: 5'- gCC-CCGcAGGUGGUgaucAGCGCCGCCg-- -3' miRNA: 3'- -GGaGGCaUCUACUA----UCGCGGCGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 78980 | 0.74 | 0.728725 |
Target: 5'- uCCUUCGgcgAGAUcGUGGcCGCCGCCUAc -3' miRNA: 3'- -GGAGGCa--UCUAcUAUC-GCGGCGGAUc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 69117 | 0.75 | 0.689414 |
Target: 5'- aCCUCUGU-GcgGAcAGCGCCGCCa-- -3' miRNA: 3'- -GGAGGCAuCuaCUaUCGCGGCGGauc -5' |
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1547 | 5' | -53.7 | NC_001347.2 | + | 208418 | 1.1 | 0.006595 |
Target: 5'- cCCUCCGUAGAUGAUAGCGCCGCCUAGc -3' miRNA: 3'- -GGAGGCAUCUACUAUCGCGGCGGAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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