Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1548 | 3' | -44.9 | NC_001347.2 | + | 65178 | 0.69 | 0.999995 |
Target: 5'- cGGCUACAGcgagugcggcgauGGCUcGCCGg---CCGUGu -3' miRNA: 3'- -CCGAUGUU-------------UUGA-UGGCaaaaGGCACc -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 228040 | 0.69 | 0.999995 |
Target: 5'- aGGCUACAAAGaUACgCGgagacgUCGUGGc -3' miRNA: 3'- -CCGAUGUUUUgAUG-GCaaaa--GGCACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 194083 | 0.69 | 0.999995 |
Target: 5'- cGCUACGAGAgcAUCGgcc-CCGUGGa -3' miRNA: 3'- cCGAUGUUUUgaUGGCaaaaGGCACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 30825 | 0.7 | 0.999965 |
Target: 5'- gGGUUugGGgacguguccGGCUACCGUgucuccagUUCCGUGu -3' miRNA: 3'- -CCGAugUU---------UUGAUGGCAa-------AAGGCACc -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 168202 | 0.7 | 0.999974 |
Target: 5'- cGGCgcgACAAuuGACguaggGCCGcgccUCCGUGGc -3' miRNA: 3'- -CCGa--UGUU--UUGa----UGGCaaa-AGGCACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 103084 | 0.7 | 0.999938 |
Target: 5'- cGCUGCAcGACcACCGg---CUGUGGc -3' miRNA: 3'- cCGAUGUuUUGaUGGCaaaaGGCACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 66005 | 0.7 | 0.999938 |
Target: 5'- uGCUGCucAAC-ACCGUguucaCCGUGGu -3' miRNA: 3'- cCGAUGuuUUGaUGGCAaaa--GGCACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 142257 | 0.72 | 0.999711 |
Target: 5'- uGGCUGCGAGGCgcugGCCGcgucgCUGaUGGa -3' miRNA: 3'- -CCGAUGUUUUGa---UGGCaaaa-GGC-ACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 37057 | 0.73 | 0.998449 |
Target: 5'- cGGCcGCGGAGgUGCUGgcggCCGUGGc -3' miRNA: 3'- -CCGaUGUUUUgAUGGCaaaaGGCACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 36400 | 0.73 | 0.999136 |
Target: 5'- cGGCUcggGCu-GGCgUGCUGUUUUCCGUGu -3' miRNA: 3'- -CCGA---UGuuUUG-AUGGCAAAAGGCACc -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 26585 | 0.73 | 0.998944 |
Target: 5'- uGGCUugGGAGC-ACCGUcucagcUCCGUGu -3' miRNA: 3'- -CCGAugUUUUGaUGGCAaa----AGGCACc -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 209911 | 0.74 | 0.997769 |
Target: 5'- uGGCUAgAGAcCUGCUGUguccaaCCGUGGc -3' miRNA: 3'- -CCGAUgUUUuGAUGGCAaaa---GGCACC- -5' |
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1548 | 3' | -44.9 | NC_001347.2 | + | 206047 | 1.16 | 0.027131 |
Target: 5'- cGGCUACAAAACUACCGUUUUCCGUGGu -3' miRNA: 3'- -CCGAUGUUUUGAUGGCAAAAGGCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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