miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1548 3' -44.9 NC_001347.2 + 206047 1.16 0.027131
Target:  5'- cGGCUACAAAACUACCGUUUUCCGUGGu -3'
miRNA:   3'- -CCGAUGUUUUGAUGGCAAAAGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 209911 0.74 0.997769
Target:  5'- uGGCUAgAGAcCUGCUGUguccaaCCGUGGc -3'
miRNA:   3'- -CCGAUgUUUuGAUGGCAaaa---GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 37057 0.73 0.998449
Target:  5'- cGGCcGCGGAGgUGCUGgcggCCGUGGc -3'
miRNA:   3'- -CCGaUGUUUUgAUGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 26585 0.73 0.998944
Target:  5'- uGGCUugGGAGC-ACCGUcucagcUCCGUGu -3'
miRNA:   3'- -CCGAugUUUUGaUGGCAaa----AGGCACc -5'
1548 3' -44.9 NC_001347.2 + 36400 0.73 0.999136
Target:  5'- cGGCUcggGCu-GGCgUGCUGUUUUCCGUGu -3'
miRNA:   3'- -CCGA---UGuuUUG-AUGGCAAAAGGCACc -5'
1548 3' -44.9 NC_001347.2 + 142257 0.72 0.999711
Target:  5'- uGGCUGCGAGGCgcugGCCGcgucgCUGaUGGa -3'
miRNA:   3'- -CCGAUGUUUUGa---UGGCaaaa-GGC-ACC- -5'
1548 3' -44.9 NC_001347.2 + 66005 0.7 0.999938
Target:  5'- uGCUGCucAAC-ACCGUguucaCCGUGGu -3'
miRNA:   3'- cCGAUGuuUUGaUGGCAaaa--GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 103084 0.7 0.999938
Target:  5'- cGCUGCAcGACcACCGg---CUGUGGc -3'
miRNA:   3'- cCGAUGUuUUGaUGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 30825 0.7 0.999965
Target:  5'- gGGUUugGGgacguguccGGCUACCGUgucuccagUUCCGUGu -3'
miRNA:   3'- -CCGAugUU---------UUGAUGGCAa-------AAGGCACc -5'
1548 3' -44.9 NC_001347.2 + 168202 0.7 0.999974
Target:  5'- cGGCgcgACAAuuGACguaggGCCGcgccUCCGUGGc -3'
miRNA:   3'- -CCGa--UGUU--UUGa----UGGCaaa-AGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 79837 0.69 0.999979
Target:  5'- aGCUACcGAGCgcaagACCGUggacgguuggcCCGUGGg -3'
miRNA:   3'- cCGAUGuUUUGa----UGGCAaaa--------GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 26683 0.69 0.999994
Target:  5'- uGGUUACAuaAGACUuugcugugucucuacACCGUg-UUCGUGGg -3'
miRNA:   3'- -CCGAUGU--UUUGA---------------UGGCAaaAGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 228040 0.69 0.999995
Target:  5'- aGGCUACAAAGaUACgCGgagacgUCGUGGc -3'
miRNA:   3'- -CCGAUGUUUUgAUG-GCaaaa--GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 194083 0.69 0.999995
Target:  5'- cGCUACGAGAgcAUCGgcc-CCGUGGa -3'
miRNA:   3'- cCGAUGUUUUgaUGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 65178 0.69 0.999995
Target:  5'- cGGCUACAGcgagugcggcgauGGCUcGCCGg---CCGUGu -3'
miRNA:   3'- -CCGAUGUU-------------UUGA-UGGCaaaaGGCACc -5'
1548 3' -44.9 NC_001347.2 + 149885 0.68 0.999996
Target:  5'- cGGC-GCAGGGCgGCCGUUucUUuuuacacagccccgCCGUGGg -3'
miRNA:   3'- -CCGaUGUUUUGaUGGCAA--AA--------------GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 181223 0.68 0.999997
Target:  5'- cGGCUACGAccccgccauggacGccguCUACCGUUUggCCGaGGa -3'
miRNA:   3'- -CCGAUGUU-------------Uu---GAUGGCAAAa-GGCaCC- -5'
1548 3' -44.9 NC_001347.2 + 79335 0.68 0.999997
Target:  5'- uGGCUGCAcacggagcacGGGCUGCUGgucUCCaUGGc -3'
miRNA:   3'- -CCGAUGU----------UUUGAUGGCaaaAGGcACC- -5'
1548 3' -44.9 NC_001347.2 + 96510 0.68 0.999998
Target:  5'- gGGCcgcgACAAGGC-GCUGg---CCGUGGa -3'
miRNA:   3'- -CCGa---UGUUUUGaUGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 140330 0.67 0.999999
Target:  5'- gGGCUGCGccGCgggGCUGUgcgaggcCUGUGGg -3'
miRNA:   3'- -CCGAUGUuuUGa--UGGCAaaa----GGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.