miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1548 3' -44.9 NC_001347.2 + 194083 0.69 0.999995
Target:  5'- cGCUACGAGAgcAUCGgcc-CCGUGGa -3'
miRNA:   3'- cCGAUGUUUUgaUGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 26683 0.69 0.999994
Target:  5'- uGGUUACAuaAGACUuugcugugucucuacACCGUg-UUCGUGGg -3'
miRNA:   3'- -CCGAUGU--UUUGA---------------UGGCAaaAGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 79837 0.69 0.999979
Target:  5'- aGCUACcGAGCgcaagACCGUggacgguuggcCCGUGGg -3'
miRNA:   3'- cCGAUGuUUUGa----UGGCAaaa--------GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 168202 0.7 0.999974
Target:  5'- cGGCgcgACAAuuGACguaggGCCGcgccUCCGUGGc -3'
miRNA:   3'- -CCGa--UGUU--UUGa----UGGCaaa-AGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 30825 0.7 0.999965
Target:  5'- gGGUUugGGgacguguccGGCUACCGUgucuccagUUCCGUGu -3'
miRNA:   3'- -CCGAugUU---------UUGAUGGCAa-------AAGGCACc -5'
1548 3' -44.9 NC_001347.2 + 66005 0.7 0.999938
Target:  5'- uGCUGCucAAC-ACCGUguucaCCGUGGu -3'
miRNA:   3'- cCGAUGuuUUGaUGGCAaaa--GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 103084 0.7 0.999938
Target:  5'- cGCUGCAcGACcACCGg---CUGUGGc -3'
miRNA:   3'- cCGAUGUuUUGaUGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 142257 0.72 0.999711
Target:  5'- uGGCUGCGAGGCgcugGCCGcgucgCUGaUGGa -3'
miRNA:   3'- -CCGAUGUUUUGa---UGGCaaaa-GGC-ACC- -5'
1548 3' -44.9 NC_001347.2 + 36400 0.73 0.999136
Target:  5'- cGGCUcggGCu-GGCgUGCUGUUUUCCGUGu -3'
miRNA:   3'- -CCGA---UGuuUUG-AUGGCAAAAGGCACc -5'
1548 3' -44.9 NC_001347.2 + 26585 0.73 0.998944
Target:  5'- uGGCUugGGAGC-ACCGUcucagcUCCGUGu -3'
miRNA:   3'- -CCGAugUUUUGaUGGCAaa----AGGCACc -5'
1548 3' -44.9 NC_001347.2 + 37057 0.73 0.998449
Target:  5'- cGGCcGCGGAGgUGCUGgcggCCGUGGc -3'
miRNA:   3'- -CCGaUGUUUUgAUGGCaaaaGGCACC- -5'
1548 3' -44.9 NC_001347.2 + 209911 0.74 0.997769
Target:  5'- uGGCUAgAGAcCUGCUGUguccaaCCGUGGc -3'
miRNA:   3'- -CCGAUgUUUuGAUGGCAaaa---GGCACC- -5'
1548 3' -44.9 NC_001347.2 + 206047 1.16 0.027131
Target:  5'- cGGCUACAAAACUACCGUUUUCCGUGGu -3'
miRNA:   3'- -CCGAUGUUUUGAUGGCAAAAGGCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.