miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1548 5' -56.1 NC_001347.2 + 75314 0.66 0.959211
Target:  5'- uUCCAucCGUugagauacCGGCACGCUCUG--GCCGc -3'
miRNA:   3'- cAGGU--GCA--------GUCGUGCGAGACacUGGC- -5'
1548 5' -56.1 NC_001347.2 + 202051 0.66 0.955575
Target:  5'- -gCCAacaaUCAGCACGUUUgcaucGUGGCCGa -3'
miRNA:   3'- caGGUgc--AGUCGUGCGAGa----CACUGGC- -5'
1548 5' -56.1 NC_001347.2 + 32020 0.66 0.951726
Target:  5'- aUCUGCGgUGGCACGC-CUGUGuACCc -3'
miRNA:   3'- cAGGUGCaGUCGUGCGaGACAC-UGGc -5'
1548 5' -56.1 NC_001347.2 + 93121 0.66 0.947659
Target:  5'- -aCCACGUCAGCGuaccaagucUGUUCggcgGgcgGACCGc -3'
miRNA:   3'- caGGUGCAGUCGU---------GCGAGa---Ca--CUGGC- -5'
1548 5' -56.1 NC_001347.2 + 38852 0.67 0.938862
Target:  5'- cGUCCGCGUC-GCGCGCcgCUagGAUCa -3'
miRNA:   3'- -CAGGUGCAGuCGUGCGa-GAcaCUGGc -5'
1548 5' -56.1 NC_001347.2 + 58861 0.67 0.929169
Target:  5'- uUCCAcCGgcagCGGCACGC-CggaGUGACCu -3'
miRNA:   3'- cAGGU-GCa---GUCGUGCGaGa--CACUGGc -5'
1548 5' -56.1 NC_001347.2 + 63113 0.67 0.929169
Target:  5'- -gCCGcCG-CGGC-CGCcgCUGUGGCCGg -3'
miRNA:   3'- caGGU-GCaGUCGuGCGa-GACACUGGC- -5'
1548 5' -56.1 NC_001347.2 + 22198 0.67 0.929169
Target:  5'- cUCCAuCG-CAGcCACGCgCUgGUGGCCGa -3'
miRNA:   3'- cAGGU-GCaGUC-GUGCGaGA-CACUGGC- -5'
1548 5' -56.1 NC_001347.2 + 1834 0.68 0.900372
Target:  5'- cGUUCGCGUCGGCGCcgcaccccgcgucGCUgCUGacGGCCGu -3'
miRNA:   3'- -CAGGUGCAGUCGUG-------------CGA-GACa-CUGGC- -5'
1548 5' -56.1 NC_001347.2 + 208008 0.68 0.89469
Target:  5'- -aCCGCGUCuGGUAcCGCUaCUGUGGgCGa -3'
miRNA:   3'- caGGUGCAG-UCGU-GCGA-GACACUgGC- -5'
1548 5' -56.1 NC_001347.2 + 210236 0.68 0.88817
Target:  5'- cGUCCGCGUCucguGCAUcCUCUGccGGCUGc -3'
miRNA:   3'- -CAGGUGCAGu---CGUGcGAGACa-CUGGC- -5'
1548 5' -56.1 NC_001347.2 + 185562 0.68 0.881438
Target:  5'- cGUCCGCaGUCGG-GCGaaaUCUGUGuACCGu -3'
miRNA:   3'- -CAGGUG-CAGUCgUGCg--AGACAC-UGGC- -5'
1548 5' -56.1 NC_001347.2 + 142133 0.69 0.867348
Target:  5'- -aCCGCGUCAuGCugGCgCUGgacGCCGa -3'
miRNA:   3'- caGGUGCAGU-CGugCGaGACac-UGGC- -5'
1548 5' -56.1 NC_001347.2 + 165512 0.69 0.844729
Target:  5'- cGUCCAgGUC-GCACGuCUCgGUGguGCCGu -3'
miRNA:   3'- -CAGGUgCAGuCGUGC-GAGaCAC--UGGC- -5'
1548 5' -56.1 NC_001347.2 + 226757 0.71 0.775999
Target:  5'- gGUCgGCGUCGGCAUGCcgCUgaucgcaGUGGCCc -3'
miRNA:   3'- -CAGgUGCAGUCGUGCGa-GA-------CACUGGc -5'
1548 5' -56.1 NC_001347.2 + 96938 0.72 0.711016
Target:  5'- cGUCCGCGcCuGCACGCcgCcGUGACUGc -3'
miRNA:   3'- -CAGGUGCaGuCGUGCGa-GaCACUGGC- -5'
1548 5' -56.1 NC_001347.2 + 15079 0.72 0.691493
Target:  5'- cGUCCGCGacCGGgACGCaguUUUGUGGCCGa -3'
miRNA:   3'- -CAGGUGCa-GUCgUGCG---AGACACUGGC- -5'
1548 5' -56.1 NC_001347.2 + 174802 0.72 0.691493
Target:  5'- aGUUCAUGUUGGCGCGCgacCUGcUGGCCu -3'
miRNA:   3'- -CAGGUGCAGUCGUGCGa--GAC-ACUGGc -5'
1548 5' -56.1 NC_001347.2 + 206087 1.1 0.004005
Target:  5'- cGUCCACGUCAGCACGCUCUGUGACCGg -3'
miRNA:   3'- -CAGGUGCAGUCGUGCGAGACACUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.