miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1549 5' -53.4 NC_001347.2 + 127583 0.66 0.986634
Target:  5'- cCGUG-GAcgcgGCCGGCGCGccUUUCGAUg -3'
miRNA:   3'- -GCACuCU----UGGCCGCGCccAAAGUUGu -5'
1549 5' -53.4 NC_001347.2 + 192188 0.67 0.984979
Target:  5'- -aUGAGcGGCCgcGGCGCGGGc-UCGGCGu -3'
miRNA:   3'- gcACUC-UUGG--CCGCGCCCaaAGUUGU- -5'
1549 5' -53.4 NC_001347.2 + 36573 0.67 0.984979
Target:  5'- --cGGGAACUGGCcuggcgGCGGGUagcCGACGa -3'
miRNA:   3'- gcaCUCUUGGCCG------CGCCCAaa-GUUGU- -5'
1549 5' -53.4 NC_001347.2 + 182185 0.67 0.97428
Target:  5'- uGUGuGGGCCGGCccucgggguGCGGGUggCGGg- -3'
miRNA:   3'- gCACuCUUGGCCG---------CGCCCAaaGUUgu -5'
1549 5' -53.4 NC_001347.2 + 1942 0.68 0.966914
Target:  5'- gGUGgcugggcugcgcggcGGGGCCGGCGaCGGGgacggCGGCGg -3'
miRNA:   3'- gCAC---------------UCUUGGCCGC-GCCCaaa--GUUGU- -5'
1549 5' -53.4 NC_001347.2 + 126670 0.69 0.95126
Target:  5'- --cGAGuACCGGCGCGuGGUggcuuaCGACGc -3'
miRNA:   3'- gcaCUCuUGGCCGCGC-CCAaa----GUUGU- -5'
1549 5' -53.4 NC_001347.2 + 156860 0.69 0.95126
Target:  5'- aCGUGAGucgUCGGCGagGGGUgUCGACc -3'
miRNA:   3'- -GCACUCuu-GGCCGCg-CCCAaAGUUGu -5'
1549 5' -53.4 NC_001347.2 + 136079 0.71 0.901929
Target:  5'- gGUGGGAcgggcccgcggacggACCGGCGCcGGGccUCGGCc -3'
miRNA:   3'- gCACUCU---------------UGGCCGCG-CCCaaAGUUGu -5'
1549 5' -53.4 NC_001347.2 + 148606 0.71 0.892967
Target:  5'- gCGUGAccggcGGugCGGuCGCGGGUggccggcgUCAGCGu -3'
miRNA:   3'- -GCACU-----CUugGCC-GCGCCCAa-------AGUUGU- -5'
1549 5' -53.4 NC_001347.2 + 200106 0.71 0.892967
Target:  5'- aGUGAGGGCCGGCuccgGCGGGca--AACc -3'
miRNA:   3'- gCACUCUUGGCCG----CGCCCaaagUUGu -5'
1549 5' -53.4 NC_001347.2 + 177363 0.71 0.886299
Target:  5'- aCGUGAGAcCCacaCGCGGGUUUCAc-- -3'
miRNA:   3'- -GCACUCUuGGcc-GCGCCCAAAGUugu -5'
1549 5' -53.4 NC_001347.2 + 170361 0.72 0.840275
Target:  5'- gCGUacaGGAGCCGGCGCGGGagcugccgucCGACAg -3'
miRNA:   3'- -GCAc--UCUUGGCCGCGCCCaaa-------GUUGU- -5'
1549 5' -53.4 NC_001347.2 + 65918 0.76 0.645496
Target:  5'- aCGUGuuucgcGAACUGGCGCguacgguggacGGGUUUCAGCGu -3'
miRNA:   3'- -GCACu-----CUUGGCCGCG-----------CCCAAAGUUGU- -5'
1549 5' -53.4 NC_001347.2 + 204951 1.09 0.008514
Target:  5'- cCGUGAGAACCGGCGCGGGUUUCAACAc -3'
miRNA:   3'- -GCACUCUUGGCCGCGCCCAAAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.