miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1551 3' -55.9 NC_001347.2 + 171955 0.66 0.963269
Target:  5'- aGUCGGGUUUGCCGcgcUGcGAGugguUCGAa -3'
miRNA:   3'- aCGGCCUAGACGGCu--AC-CUCu---AGCUg -5'
1551 3' -55.9 NC_001347.2 + 139412 0.66 0.963269
Target:  5'- uUGCCGG-UCaGCUGAuuccaugcgUGGAGGaggCGACc -3'
miRNA:   3'- -ACGGCCuAGaCGGCU---------ACCUCUa--GCUG- -5'
1551 3' -55.9 NC_001347.2 + 187 0.66 0.95987
Target:  5'- gUGgCGGGUgUGCCGgcGGGGuguggUGGCg -3'
miRNA:   3'- -ACgGCCUAgACGGCuaCCUCua---GCUG- -5'
1551 3' -55.9 NC_001347.2 + 229666 0.66 0.95987
Target:  5'- gUGgCGGGUgUGCCGgcGGGGuguggUGGCg -3'
miRNA:   3'- -ACgGCCUAgACGGCuaCCUCua---GCUG- -5'
1551 3' -55.9 NC_001347.2 + 198132 0.66 0.956261
Target:  5'- cGCgCGGuggcagCgggGgUGGUGGGGAUCGGCa -3'
miRNA:   3'- aCG-GCCua----Ga--CgGCUACCUCUAGCUG- -5'
1551 3' -55.9 NC_001347.2 + 136106 0.66 0.956261
Target:  5'- cGCCGGGccUCgGCCGG-GGAGggUGGg -3'
miRNA:   3'- aCGGCCU--AGaCGGCUaCCUCuaGCUg -5'
1551 3' -55.9 NC_001347.2 + 178906 0.66 0.951248
Target:  5'- cGCCGGucguggugaaggauGUCguguacacgGCCGG-GGAGggCGACg -3'
miRNA:   3'- aCGGCC--------------UAGa--------CGGCUaCCUCuaGCUG- -5'
1551 3' -55.9 NC_001347.2 + 108306 0.66 0.944132
Target:  5'- cGCCGGugCUGCCGcacGAGAcgCGACu -3'
miRNA:   3'- aCGGCCuaGACGGCuacCUCUa-GCUG- -5'
1551 3' -55.9 NC_001347.2 + 135965 0.67 0.934932
Target:  5'- gGCCGGG-CcGUCGGauggGGGGGUCGAg -3'
miRNA:   3'- aCGGCCUaGaCGGCUa---CCUCUAGCUg -5'
1551 3' -55.9 NC_001347.2 + 136184 0.67 0.918324
Target:  5'- gGCCGGAaccCUGCCGcggacugcgccGGGGggCGGCg -3'
miRNA:   3'- aCGGCCUa--GACGGCua---------CCUCuaGCUG- -5'
1551 3' -55.9 NC_001347.2 + 47104 0.67 0.913809
Target:  5'- uUGUCGGccgacaUGCCGAUGGuauGggCGGCg -3'
miRNA:   3'- -ACGGCCuag---ACGGCUACCu--CuaGCUG- -5'
1551 3' -55.9 NC_001347.2 + 69837 0.68 0.907961
Target:  5'- cGCCGuuGUCU-CCGGcUGGAGAUCaGACg -3'
miRNA:   3'- aCGGCc-UAGAcGGCU-ACCUCUAG-CUG- -5'
1551 3' -55.9 NC_001347.2 + 190153 0.68 0.907961
Target:  5'- -aCCGGGuUCUGCCGGcaUGGGGggCGcCa -3'
miRNA:   3'- acGGCCU-AGACGGCU--ACCUCuaGCuG- -5'
1551 3' -55.9 NC_001347.2 + 113045 0.71 0.786715
Target:  5'- cGCCGccUCUGCCGGcuccgagGGAGAaagCGACg -3'
miRNA:   3'- aCGGCcuAGACGGCUa------CCUCUa--GCUG- -5'
1551 3' -55.9 NC_001347.2 + 143670 0.75 0.553103
Target:  5'- cGCCGGAg--GCCGGccUGGAGGUCuGCg -3'
miRNA:   3'- aCGGCCUagaCGGCU--ACCUCUAGcUG- -5'
1551 3' -55.9 NC_001347.2 + 203439 1.1 0.003724
Target:  5'- uUGCCGGAUCUGCCGAUGGAGAUCGACa -3'
miRNA:   3'- -ACGGCCUAGACGGCUACCUCUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.