miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1551 5' -58.4 NC_001347.2 + 31439 0.68 0.79616
Target:  5'- -cGCUGG-CUCaCGcCGGCAACCCCUAUg -3'
miRNA:   3'- gcUGGCUgGAG-GC-GUCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 135613 0.68 0.79616
Target:  5'- uCGGCCGACCgCCGCG---ACCCCc-- -3'
miRNA:   3'- -GCUGGCUGGaGGCGUcguUGGGGaug -5'
1551 5' -58.4 NC_001347.2 + 191829 0.68 0.787465
Target:  5'- uCGugCGACCUuuugaCCGCGGUggUgCCUGu -3'
miRNA:   3'- -GCugGCUGGA-----GGCGUCGuuGgGGAUg -5'
1551 5' -58.4 NC_001347.2 + 88601 0.68 0.787465
Target:  5'- uGGgCGACCUgaGCGGCGGCggCCUGCg -3'
miRNA:   3'- gCUgGCUGGAggCGUCGUUGg-GGAUG- -5'
1551 5' -58.4 NC_001347.2 + 157286 0.68 0.787465
Target:  5'- uCGGCgGuCCUCCaGCAGCAGCUggUGCa -3'
miRNA:   3'- -GCUGgCuGGAGG-CGUCGUUGGggAUG- -5'
1551 5' -58.4 NC_001347.2 + 30453 0.68 0.787465
Target:  5'- gGGCCGaACC-CCGuCAGC-ACCCCg-- -3'
miRNA:   3'- gCUGGC-UGGaGGC-GUCGuUGGGGaug -5'
1551 5' -58.4 NC_001347.2 + 91170 0.69 0.760644
Target:  5'- uCGcCCGugCUCCgaggaGCAGCGcGCCuCCUACc -3'
miRNA:   3'- -GCuGGCugGAGG-----CGUCGU-UGG-GGAUG- -5'
1551 5' -58.4 NC_001347.2 + 73963 0.69 0.742229
Target:  5'- uGACCGACCgcaCGgAGCGACgCCgucgACu -3'
miRNA:   3'- gCUGGCUGGag-GCgUCGUUGgGGa---UG- -5'
1551 5' -58.4 NC_001347.2 + 193663 0.69 0.731947
Target:  5'- -cGCCGcucgcgcGCCUCCGCucGCGGCCgCUACc -3'
miRNA:   3'- gcUGGC-------UGGAGGCGu-CGUUGGgGAUG- -5'
1551 5' -58.4 NC_001347.2 + 12435 0.7 0.712059
Target:  5'- gCGugUGACCUgucguuaUCGCGGCGaaugcguGCCUCUGCg -3'
miRNA:   3'- -GCugGCUGGA-------GGCGUCGU-------UGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 196882 0.7 0.704407
Target:  5'- gGAuucCCGACUaCCGCAGCGugUCgCUGCg -3'
miRNA:   3'- gCU---GGCUGGaGGCGUCGUugGG-GAUG- -5'
1551 5' -58.4 NC_001347.2 + 131726 0.7 0.704407
Target:  5'- aCGACCGGCCgucgccgccgCCGCGGUuGCUaCUACu -3'
miRNA:   3'- -GCUGGCUGGa---------GGCGUCGuUGGgGAUG- -5'
1551 5' -58.4 NC_001347.2 + 175000 0.7 0.694792
Target:  5'- gGGCCGuGCCgguggagUCGCAGCAGCgCCUGg -3'
miRNA:   3'- gCUGGC-UGGa------GGCGUCGUUGgGGAUg -5'
1551 5' -58.4 NC_001347.2 + 47453 0.71 0.646152
Target:  5'- uCGAUCGGCCUCgacgaacgagaCGCGGCGACgCCUcuccACg -3'
miRNA:   3'- -GCUGGCUGGAG-----------GCGUCGUUGgGGA----UG- -5'
1551 5' -58.4 NC_001347.2 + 93150 0.72 0.59725
Target:  5'- gGGCgGACCgcucucguUCCGCggcccgaaaAGCAGCUCCUGCg -3'
miRNA:   3'- gCUGgCUGG--------AGGCG---------UCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 62768 0.72 0.558507
Target:  5'- gCGGCCGACC-CCGCcguuGCGGCCgCCg-- -3'
miRNA:   3'- -GCUGGCUGGaGGCGu---CGUUGG-GGaug -5'
1551 5' -58.4 NC_001347.2 + 117559 0.73 0.529919
Target:  5'- uGACCacGCCga-GCAGCAGCUCCUGCg -3'
miRNA:   3'- gCUGGc-UGGaggCGUCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 168221 0.75 0.422167
Target:  5'- gGGCCGcGCCUCCGUGGCAGCCguuuccagCUGCg -3'
miRNA:   3'- gCUGGC-UGGAGGCGUCGUUGGg-------GAUG- -5'
1551 5' -58.4 NC_001347.2 + 63240 0.75 0.413783
Target:  5'- -cGCCGGCCUCCGCGGCcgcuGCgCCCg-- -3'
miRNA:   3'- gcUGGCUGGAGGCGUCGu---UG-GGGaug -5'
1551 5' -58.4 NC_001347.2 + 85655 0.75 0.413783
Target:  5'- aCGGCCGccgcgucguGCCUCCGCAGCAcgUUCUGCa -3'
miRNA:   3'- -GCUGGC---------UGGAGGCGUCGUugGGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.