miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15517 3' -53.2 NC_004001.2 + 12447 0.66 0.724472
Target:  5'- -aCCUUAaagguuUGUgGGGAGugCaUGCCCCg -3'
miRNA:   3'- gcGGAAU------ACAaCCUUCugGaGCGGGG- -5'
15517 3' -53.2 NC_004001.2 + 17826 0.67 0.672542
Target:  5'- cCGCCUucuUAUGaggaagcaacgaagcUUGGAaugcccaccacuAGACCgauaGCCCCa -3'
miRNA:   3'- -GCGGA---AUAC---------------AACCU------------UCUGGag--CGGGG- -5'
15517 3' -53.2 NC_004001.2 + 8813 0.67 0.638122
Target:  5'- gGCCcaugaGUUGGGAGaaugcauucaugcccGCCUCGUUCCa -3'
miRNA:   3'- gCGGaaua-CAACCUUC---------------UGGAGCGGGG- -5'
15517 3' -53.2 NC_004001.2 + 6629 0.69 0.542367
Target:  5'- uGCCUauguagGUUGGAuaGCaUCGCCCCc -3'
miRNA:   3'- gCGGAaua---CAACCUucUGgAGCGGGG- -5'
15517 3' -53.2 NC_004001.2 + 10265 1.12 0.000536
Target:  5'- cCGCCUUAUGUUGGAAGACCUCGCCCCu -3'
miRNA:   3'- -GCGGAAUACAACCUUCUGGAGCGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.