miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15519 5' -51.7 NC_004001.2 + 10757 0.66 0.761388
Target:  5'- gCAGGGACAG-CCUuuugugauugcuGCuGCUgCUGCUGCGa -3'
miRNA:   3'- -GUCUUUGUUaGGG------------UG-CGA-GACGACGU- -5'
15519 5' -51.7 NC_004001.2 + 21464 0.67 0.693053
Target:  5'- cCAGAccguGCAggGUCCC-CGUUCUGCcgccUGCGg -3'
miRNA:   3'- -GUCUu---UGU--UAGGGuGCGAGACG----ACGU- -5'
15519 5' -51.7 NC_004001.2 + 2847 0.67 0.693053
Target:  5'- uCAGAGACAAUugacUCUugGUUCUGCcagcugugGCAa -3'
miRNA:   3'- -GUCUUUGUUA----GGGugCGAGACGa-------CGU- -5'
15519 5' -51.7 NC_004001.2 + 12860 0.94 0.011725
Target:  5'- uCAGAAACAAUCCCACGCUCUG-UGCAc -3'
miRNA:   3'- -GUCUUUGUUAGGGUGCGAGACgACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.