Results 1 - 12 of 12 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1552 | 3' | -39 | NC_001347.2 | + | 65926 | 0.66 | 1 |
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Target: 5'- -cGCGAACUGGCGcguacGGUGGa -3' miRNA: 3'- gaUGUUUGAUCGUaaga-CCACU- -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 43695 | 0.67 | 1 |
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Target: 5'- uUGCGGAUUGaCAUUCUuGGUGGu -3' miRNA: 3'- gAUGUUUGAUcGUAAGA-CCACU- -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 77629 | 0.66 | 1 |
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Target: 5'- gUGCAAACgGGCGUgCUGGg-- -3' miRNA: 3'- gAUGUUUGaUCGUAaGACCacu -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 34864 | 0.67 | 1 |
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Target: 5'- -gACAGACU-GCAggugUCcGGUGAg -3' miRNA: 3'- gaUGUUUGAuCGUa---AGaCCACU- -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 133134 | 0.67 | 1 |
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Target: 5'- -gAC-GGCUAGCuUUUUGGUGGu -3' miRNA: 3'- gaUGuUUGAUCGuAAGACCACU- -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 20854 | 0.67 | 1 |
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Target: 5'- uUACgGGGCUGGCGuUUCUaGGUGGc -3' miRNA: 3'- gAUG-UUUGAUCGU-AAGA-CCACU- -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 62286 | 0.68 | 1 |
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Target: 5'- cCUACGGcguGCUGGCuUUcCUGGUGu -3' miRNA: 3'- -GAUGUU---UGAUCGuAA-GACCACu -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 173197 | 0.68 | 1 |
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Target: 5'- cCUACGGGCaccguGCAgaUUCUGGUGc -3' miRNA: 3'- -GAUGUUUGau---CGU--AAGACCACu -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 163998 | 0.7 | 1 |
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Target: 5'- uCUGCAAcuCUAGCAUUUUGGc-- -3' miRNA: 3'- -GAUGUUu-GAUCGUAAGACCacu -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 131773 | 0.68 | 1 |
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Target: 5'- aUGCGAAUUGGUGgcuaUGGUGAg -3' miRNA: 3'- gAUGUUUGAUCGUaag-ACCACU- -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 138702 | 0.76 | 0.999977 |
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Target: 5'- gUGCGucGGCUAGCggUCUGGUGc -3' miRNA: 3'- gAUGU--UUGAUCGuaAGACCACu -5' |
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| 1552 | 3' | -39 | NC_001347.2 | + | 202377 | 1.08 | 0.180727 |
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Target: 5'- uCUACAAACUAGCAUUCUGGUGAg -3' miRNA: 3'- -GAUGUUUGAUCGUAAGACCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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