Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1552 | 5' | -41.1 | NC_001347.2 | + | 136113 | 0.67 | 1 |
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Target: 5'- cCUCGgcCGGGGAGGgUGGggGg -3' miRNA: 3'- aGAGU--GCCCUUCCgAUCaaU- -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 155312 | 0.67 | 1 |
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Target: 5'- ---gACGGGGccGGGCUGGUc- -3' miRNA: 3'- agagUGCCCU--UCCGAUCAau -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 35451 | 0.66 | 1 |
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Target: 5'- uUUUUAuCGGGAauGGGCUAGg-- -3' miRNA: 3'- -AGAGU-GCCCU--UCCGAUCaau -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 201969 | 0.67 | 1 |
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Target: 5'- --cCACGuGGAaccuuuAGGCUGGUUGg -3' miRNA: 3'- agaGUGC-CCU------UCCGAUCAAU- -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 139089 | 0.7 | 0.999999 |
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Target: 5'- gCUCACGGuGGAGGCg----- -3' miRNA: 3'- aGAGUGCC-CUUCCGaucaau -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 179521 | 0.72 | 0.999952 |
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Target: 5'- -aUCACcuGGAAGGCUGGUUu -3' miRNA: 3'- agAGUGc-CCUUCCGAUCAAu -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 189498 | 0.73 | 0.999881 |
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Target: 5'- gUUCA-GGGAAGGCUAGa-- -3' miRNA: 3'- aGAGUgCCCUUCCGAUCaau -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 31344 | 0.74 | 0.999551 |
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Target: 5'- cCUCACGGGAagaagAGGCUAa--- -3' miRNA: 3'- aGAGUGCCCU-----UCCGAUcaau -5' |
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| 1552 | 5' | -41.1 | NC_001347.2 | + | 202416 | 1.04 | 0.139825 |
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Target: 5'- cUCUCACGGGAAGGCUAGUUAg -3' miRNA: 3'- -AGAGUGCCCUUCCGAUCAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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