miRNA display CGI


Results 41 - 60 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 227824 0.67 0.985712
Target:  5'- aAGAAAA-GAAGCaCaAGCuCGGUCGCa -3'
miRNA:   3'- -UCUUUUaCUUCGcGaUCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 229695 0.67 0.985712
Target:  5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3'
miRNA:   3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 2365 0.67 0.985712
Target:  5'- ------gGgcGCGCUGGCGCuGGgaCGCg -3'
miRNA:   3'- ucuuuuaCuuCGCGAUCGCG-CCg-GCG- -5'
1553 5' -52.8 NC_001347.2 + 216 0.67 0.985712
Target:  5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3'
miRNA:   3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 113115 0.67 0.985712
Target:  5'- ------gGAAGCGC-AG-GCGGCUGUa -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 172535 0.67 0.985712
Target:  5'- ------gGggGCccGCUggcucGGCGCGGCUGUa -3'
miRNA:   3'- ucuuuuaCuuCG--CGA-----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 198359 0.67 0.985542
Target:  5'- cGGguGAUGAguuucuGGCGCaggugggUGGCGCgcgGGUCGCg -3'
miRNA:   3'- -UCuuUUACU------UCGCG-------AUCGCG---CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 1910 0.67 0.983941
Target:  5'- -----cUGGcuGGCGCUgGGCGCGGugcugcCCGCg -3'
miRNA:   3'- ucuuuuACU--UCGCGA-UCGCGCC------GGCG- -5'
1553 5' -52.8 NC_001347.2 + 94972 0.67 0.98201
Target:  5'- cGAGcGUGGAGaCGagcGCGCaGCCGCu -3'
miRNA:   3'- uCUUuUACUUC-GCgauCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 168969 0.68 0.966595
Target:  5'- uAGAGuucGAGGCGCagccgGGCGC-GCUGCu -3'
miRNA:   3'- -UCUUuuaCUUCGCGa----UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 169953 0.68 0.966595
Target:  5'- gGGGAGAUGAcAGCGagcucgAGgaGgGGCCGCu -3'
miRNA:   3'- -UCUUUUACU-UCGCga----UCg-CgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 171278 0.68 0.966595
Target:  5'- uGuuAAUGAAGCGCUAccguGCGCGugaGCaGCg -3'
miRNA:   3'- uCuuUUACUUCGCGAU----CGCGC---CGgCG- -5'
1553 5' -52.8 NC_001347.2 + 44018 0.68 0.963323
Target:  5'- gAGGAAcgGAuaacGCGgUGGCGaCGGCaGCg -3'
miRNA:   3'- -UCUUUuaCUu---CGCgAUCGC-GCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 228087 0.68 0.966595
Target:  5'- uGGAuaucGGUGAAGC---AGCGUGGCgGCg -3'
miRNA:   3'- -UCUu---UUACUUCGcgaUCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 37057 0.68 0.966595
Target:  5'- cGGccGcgGAGGUGCUG--GCGGCCGUg -3'
miRNA:   3'- -UCuuUuaCUUCGCGAUcgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 77763 0.68 0.966595
Target:  5'- cGAGGcgGccgagcGGGCGCaauuuguacGCGCGGCCGUg -3'
miRNA:   3'- uCUUUuaC------UUCGCGau-------CGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 190011 0.68 0.972511
Target:  5'- uGAAAccgGggGCG--AGCGCGGCUuuGCa -3'
miRNA:   3'- uCUUUua-CuuCGCgaUCGCGCCGG--CG- -5'
1553 5' -52.8 NC_001347.2 + 31 0.68 0.969656
Target:  5'- cGGcgGUGuuuuGGGUGUgucggGGCGCGGCCGg -3'
miRNA:   3'- uCUuuUAC----UUCGCGa----UCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 11984 0.68 0.969656
Target:  5'- uAGAGuuUGAGGacaucuuugGC-AGCGCGGCUGUc -3'
miRNA:   3'- -UCUUuuACUUCg--------CGaUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 104332 0.68 0.959833
Target:  5'- -cGAGGUGGAcCGCUGGauccggcaCGCGGCCGg -3'
miRNA:   3'- ucUUUUACUUcGCGAUC--------GCGCCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.