miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 197675 0.67 0.979909
Target:  5'- uGAAGacGUGGAGCGCgcuGCGCagGGCagacuGCg -3'
miRNA:   3'- uCUUU--UACUUCGCGau-CGCG--CCGg----CG- -5'
1553 5' -52.8 NC_001347.2 + 172535 0.67 0.985712
Target:  5'- ------gGggGCccGCUggcucGGCGCGGCUGUa -3'
miRNA:   3'- ucuuuuaCuuCG--CGA-----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 94972 0.67 0.98201
Target:  5'- cGAGcGUGGAGaCGagcGCGCaGCCGCu -3'
miRNA:   3'- uCUUuUACUUC-GCgauCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 2488 0.67 0.98201
Target:  5'- ------cGccGCGCUGugggcGCGCGaGCCGCa -3'
miRNA:   3'- ucuuuuaCuuCGCGAU-----CGCGC-CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 126880 0.67 0.983941
Target:  5'- -----uUGggGCugGCcGGCuacgGCGGCCGCa -3'
miRNA:   3'- ucuuuuACuuCG--CGaUCG----CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 165104 0.67 0.979909
Target:  5'- aGGAAGGUGcGGCGgUGGuCGuuGUCGCu -3'
miRNA:   3'- -UCUUUUACuUCGCgAUC-GCgcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 180290 0.67 0.979909
Target:  5'- ------aGAAGCGC-AGCGuCGGCgaGCg -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCGC-GCCGg-CG- -5'
1553 5' -52.8 NC_001347.2 + 158094 0.67 0.97763
Target:  5'- ------cGccGCGCU-GCGCGGCgGCc -3'
miRNA:   3'- ucuuuuaCuuCGCGAuCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 90901 0.67 0.97763
Target:  5'- aAGAuccaGGAGCGCUA-CGCGgaGCUGCa -3'
miRNA:   3'- -UCUuuuaCUUCGCGAUcGCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 138946 0.67 0.97763
Target:  5'- gAGGAAcuaaccGCGCUAGCGCcgguggGGcCCGCg -3'
miRNA:   3'- -UCUUUuacuu-CGCGAUCGCG------CC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 197351 0.67 0.975166
Target:  5'- uAGAcGAUuuuauGCGCcgccAGCGCGGUCGCc -3'
miRNA:   3'- -UCUuUUAcuu--CGCGa---UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 76606 0.67 0.979909
Target:  5'- cGAGAGguccucgcAGGCGgcGGCuGCGGCCGCg -3'
miRNA:   3'- uCUUUUac------UUCGCgaUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 193994 0.67 0.981807
Target:  5'- cGcuGGUGggGCaggauaaGUUGGUGCGGCUGg -3'
miRNA:   3'- uCuuUUACuuCG-------CGAUCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 152404 0.67 0.981807
Target:  5'- uGGAGAUGAGGCGgcguggaCUGGgacgaggaggaGgGGCCGCa -3'
miRNA:   3'- uCUUUUACUUCGC-------GAUCg----------CgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 102412 0.67 0.975166
Target:  5'- cAGGAAcccAUGGgcGGUGC-GGCGCG-CCGCa -3'
miRNA:   3'- -UCUUU---UACU--UCGCGaUCGCGCcGGCG- -5'
1553 5' -52.8 NC_001347.2 + 216 0.67 0.985712
Target:  5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3'
miRNA:   3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 166769 0.66 0.990136
Target:  5'- ------cGGAGCGCgccaugAGCuCGGCCaGCa -3'
miRNA:   3'- ucuuuuaCUUCGCGa-----UCGcGCCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 2447 0.66 0.991344
Target:  5'- uGGGAGcgGccGCGCUGGgaCGC-GCUGCa -3'
miRNA:   3'- -UCUUUuaCuuCGCGAUC--GCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 149885 0.66 0.991344
Target:  5'- --------cGGCGC-AGgGCGGCCGUu -3'
miRNA:   3'- ucuuuuacuUCGCGaUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 140675 0.66 0.992431
Target:  5'- gGGAAuGAUGggGCGCg---GCGGUCGn -3'
miRNA:   3'- -UCUU-UUACuuCGCGaucgCGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.