Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1553 | 5' | -52.8 | NC_001347.2 | + | 165104 | 0.67 | 0.979909 |
Target: 5'- aGGAAGGUGcGGCGgUGGuCGuuGUCGCu -3' miRNA: 3'- -UCUUUUACuUCGCgAUC-GCgcCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 180290 | 0.67 | 0.979909 |
Target: 5'- ------aGAAGCGC-AGCGuCGGCgaGCg -3' miRNA: 3'- ucuuuuaCUUCGCGaUCGC-GCCGg-CG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 193994 | 0.67 | 0.981807 |
Target: 5'- cGcuGGUGggGCaggauaaGUUGGUGCGGCUGg -3' miRNA: 3'- uCuuUUACuuCG-------CGAUCGCGCCGGCg -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 152404 | 0.67 | 0.981807 |
Target: 5'- uGGAGAUGAGGCGgcguggaCUGGgacgaggaggaGgGGCCGCa -3' miRNA: 3'- uCUUUUACUUCGC-------GAUCg----------CgCCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 94972 | 0.67 | 0.98201 |
Target: 5'- cGAGcGUGGAGaCGagcGCGCaGCCGCu -3' miRNA: 3'- uCUUuUACUUC-GCgauCGCGcCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 2488 | 0.67 | 0.98201 |
Target: 5'- ------cGccGCGCUGugggcGCGCGaGCCGCa -3' miRNA: 3'- ucuuuuaCuuCGCGAU-----CGCGC-CGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 126880 | 0.67 | 0.983941 |
Target: 5'- -----uUGggGCugGCcGGCuacgGCGGCCGCa -3' miRNA: 3'- ucuuuuACuuCG--CGaUCG----CGCCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 1910 | 0.67 | 0.983941 |
Target: 5'- -----cUGGcuGGCGCUgGGCGCGGugcugcCCGCg -3' miRNA: 3'- ucuuuuACU--UCGCGA-UCGCGCC------GGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 198359 | 0.67 | 0.985542 |
Target: 5'- cGGguGAUGAguuucuGGCGCaggugggUGGCGCgcgGGUCGCg -3' miRNA: 3'- -UCuuUUACU------UCGCG-------AUCGCG---CCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 172535 | 0.67 | 0.985712 |
Target: 5'- ------gGggGCccGCUggcucGGCGCGGCUGUa -3' miRNA: 3'- ucuuuuaCuuCG--CGA-----UCGCGCCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 227824 | 0.67 | 0.985712 |
Target: 5'- aAGAAAA-GAAGCaCaAGCuCGGUCGCa -3' miRNA: 3'- -UCUUUUaCUUCGcGaUCGcGCCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 229695 | 0.67 | 0.985712 |
Target: 5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3' miRNA: 3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 2365 | 0.67 | 0.985712 |
Target: 5'- ------gGgcGCGCUGGCGCuGGgaCGCg -3' miRNA: 3'- ucuuuuaCuuCGCGAUCGCG-CCg-GCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 113115 | 0.67 | 0.985712 |
Target: 5'- ------gGAAGCGC-AG-GCGGCUGUa -3' miRNA: 3'- ucuuuuaCUUCGCGaUCgCGCCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 216 | 0.67 | 0.985712 |
Target: 5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3' miRNA: 3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 129199 | 0.67 | 0.985712 |
Target: 5'- -------cAAGCGac-GCGUGGCCGCg -3' miRNA: 3'- ucuuuuacUUCGCgauCGCGCCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 113168 | 0.66 | 0.987017 |
Target: 5'- cGAAGAggGAAcGCGCgccccagccgccGGCGUGGCgGCc -3' miRNA: 3'- uCUUUUa-CUU-CGCGa-----------UCGCGCCGgCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 40672 | 0.66 | 0.987329 |
Target: 5'- cGGGGAcgGGgguuGCGCUGGgGCcggGGCUGUu -3' miRNA: 3'- -UCUUUuaCUu---CGCGAUCgCG---CCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 75402 | 0.66 | 0.987329 |
Target: 5'- -------cAAGCGggAGCgGCGGCCGUg -3' miRNA: 3'- ucuuuuacUUCGCgaUCG-CGCCGGCG- -5' |
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1553 | 5' | -52.8 | NC_001347.2 | + | 106280 | 0.66 | 0.988374 |
Target: 5'- cGGAAAAUGccgccgccaacgccGAGCuCUgucGGCGCcGCCGCu -3' miRNA: 3'- -UCUUUUAC--------------UUCGcGA---UCGCGcCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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