miRNA display CGI


Results 61 - 80 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 152404 0.67 0.981807
Target:  5'- uGGAGAUGAGGCGgcguggaCUGGgacgaggaggaGgGGCCGCa -3'
miRNA:   3'- uCUUUUACUUCGC-------GAUCg----------CgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 152794 0.66 0.988801
Target:  5'- cGAAGAUGAcGUGCauGUGCaaccGGCCGUc -3'
miRNA:   3'- uCUUUUACUuCGCGauCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 153218 0.72 0.841301
Target:  5'- cAGGucGUGcAGCGUgaGGCGCGGgCGCg -3'
miRNA:   3'- -UCUuuUACuUCGCGa-UCGCGCCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 154681 0.71 0.886494
Target:  5'- uGAuGAUGAGGUGCUgAGCGCcgcacgGGgCGCg -3'
miRNA:   3'- uCUuUUACUUCGCGA-UCGCG------CCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 158094 0.67 0.97763
Target:  5'- ------cGccGCGCU-GCGCGGCgGCc -3'
miRNA:   3'- ucuuuuaCuuCGCGAuCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 161726 0.66 0.991344
Target:  5'- cGAuu-UGAuGCGCUAGCGUcacGG-CGCu -3'
miRNA:   3'- uCUuuuACUuCGCGAUCGCG---CCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 163612 0.7 0.934096
Target:  5'- aGGccAGUGucAGCGCcgAGcCGCGGCUGCc -3'
miRNA:   3'- -UCuuUUACu-UCGCGa-UC-GCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 165104 0.67 0.979909
Target:  5'- aGGAAGGUGcGGCGgUGGuCGuuGUCGCu -3'
miRNA:   3'- -UCUUUUACuUCGCgAUC-GCgcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 166769 0.66 0.990136
Target:  5'- ------cGGAGCGCgccaugAGCuCGGCCaGCa -3'
miRNA:   3'- ucuuuuaCUUCGCGa-----UCGcGCCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 167873 0.69 0.943612
Target:  5'- gGGAAAcAUGAGGcCGCUGGCGUca-CGCg -3'
miRNA:   3'- -UCUUU-UACUUC-GCGAUCGCGccgGCG- -5'
1553 5' -52.8 NC_001347.2 + 168799 0.66 0.992431
Target:  5'- ----cAUGGAcGCGCgcGCGguggccaaaCGGCCGCg -3'
miRNA:   3'- ucuuuUACUU-CGCGauCGC---------GCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 168969 0.68 0.966595
Target:  5'- uAGAGuucGAGGCGCagccgGGCGC-GCUGCu -3'
miRNA:   3'- -UCUUuuaCUUCGCGa----UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 169953 0.68 0.966595
Target:  5'- gGGGAGAUGAcAGCGagcucgAGgaGgGGCCGCu -3'
miRNA:   3'- -UCUUUUACU-UCGCga----UCg-CgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 171278 0.68 0.966595
Target:  5'- uGuuAAUGAAGCGCUAccguGCGCGugaGCaGCg -3'
miRNA:   3'- uCuuUUACUUCGCGAU----CGCGC---CGgCG- -5'
1553 5' -52.8 NC_001347.2 + 172064 0.66 0.992431
Target:  5'- ------gGAAGCGCU-GCGC-GCCGa -3'
miRNA:   3'- ucuuuuaCUUCGCGAuCGCGcCGGCg -5'
1553 5' -52.8 NC_001347.2 + 172535 0.67 0.985712
Target:  5'- ------gGggGCccGCUggcucGGCGCGGCUGUa -3'
miRNA:   3'- ucuuuuaCuuCG--CGA-----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 173721 0.78 0.519814
Target:  5'- cGGAAAAUGAgcAGCGgUGGCgGCGGCgGUg -3'
miRNA:   3'- -UCUUUUACU--UCGCgAUCG-CGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 173952 0.72 0.841301
Target:  5'- aAGAAGcaaAAGUGCggcuagAGCGCGGgCCGCg -3'
miRNA:   3'- -UCUUUuacUUCGCGa-----UCGCGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 174877 0.73 0.824641
Target:  5'- gAGAcgguAAUGAGGCGCUGaCGaCGGUCGUc -3'
miRNA:   3'- -UCUu---UUACUUCGCGAUcGC-GCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 178120 0.74 0.761235
Target:  5'- aGGAAacuGAUGAAGCGCggAGC-CaGGCUGCg -3'
miRNA:   3'- -UCUU---UUACUUCGCGa-UCGcG-CCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.