miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 178533 0.66 0.992431
Target:  5'- cGAAAAgcAGGUGCUggaAGCGC-GUCGCg -3'
miRNA:   3'- uCUUUUacUUCGCGA---UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 180290 0.67 0.979909
Target:  5'- ------aGAAGCGC-AGCGuCGGCgaGCg -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCGC-GCCGg-CG- -5'
1553 5' -52.8 NC_001347.2 + 182608 0.69 0.948014
Target:  5'- gAGGAGuuccAUGAAGCGCUugGGUGUaGGcCCGUc -3'
miRNA:   3'- -UCUUU----UACUUCGCGA--UCGCG-CC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 183451 0.7 0.91219
Target:  5'- uAGguGGUGAGGCGCggaUAGCGCgccucGGCCu- -3'
miRNA:   3'- -UCuuUUACUUCGCG---AUCGCG-----CCGGcg -5'
1553 5' -52.8 NC_001347.2 + 184684 0.69 0.943612
Target:  5'- gAGAcGGAUGGAGCGCgcccacauGUGCGGCgucuggUGCa -3'
miRNA:   3'- -UCU-UUUACUUCGCGau------CGCGCCG------GCG- -5'
1553 5' -52.8 NC_001347.2 + 184735 0.66 0.992328
Target:  5'- gAGGAcGUGGcacaguucgcgguGGCGCUcGUGUGGCaGCa -3'
miRNA:   3'- -UCUUuUACU-------------UCGCGAuCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 187336 0.78 0.549579
Target:  5'- cGAGGAguucGAGGUGCguuGCGUGGCCGUg -3'
miRNA:   3'- uCUUUUa---CUUCGCGau-CGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 187472 0.69 0.938973
Target:  5'- gAGAucGUGGAacgcGCGCUcguaAGCGCGGUCa- -3'
miRNA:   3'- -UCUuuUACUU----CGCGA----UCGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 187754 0.71 0.885804
Target:  5'- gGGAGGAgcUGGAGCGCaaaugucUGGCGCGcauucaggagcGCUGCa -3'
miRNA:   3'- -UCUUUU--ACUUCGCG-------AUCGCGC-----------CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 190011 0.68 0.972511
Target:  5'- uGAAAccgGggGCG--AGCGCGGCUuuGCa -3'
miRNA:   3'- uCUUUua-CuuCGCgaUCGCGCCGG--CG- -5'
1553 5' -52.8 NC_001347.2 + 193994 0.67 0.981807
Target:  5'- cGcuGGUGggGCaggauaaGUUGGUGCGGCUGg -3'
miRNA:   3'- uCuuUUACuuCG-------CGAUCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 197351 0.67 0.975166
Target:  5'- uAGAcGAUuuuauGCGCcgccAGCGCGGUCGCc -3'
miRNA:   3'- -UCUuUUAcuu--CGCGa---UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 197675 0.67 0.979909
Target:  5'- uGAAGacGUGGAGCGCgcuGCGCagGGCagacuGCg -3'
miRNA:   3'- uCUUU--UACUUCGCGau-CGCG--CCGg----CG- -5'
1553 5' -52.8 NC_001347.2 + 198359 0.67 0.985542
Target:  5'- cGGguGAUGAguuucuGGCGCaggugggUGGCGCgcgGGUCGCg -3'
miRNA:   3'- -UCuuUUACU------UCGCG-------AUCGCG---CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 199077 1.13 0.004455
Target:  5'- gAGAAAAUGAAGCGCUAGCGCGGCCGCa -3'
miRNA:   3'- -UCUUUUACUUCGCGAUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 199877 0.66 0.99201
Target:  5'- cAGAucuuccguGGCGCU-GCGCGcCCGCg -3'
miRNA:   3'- -UCUuuuacu--UCGCGAuCGCGCcGGCG- -5'
1553 5' -52.8 NC_001347.2 + 201805 0.73 0.807279
Target:  5'- -------aGAGCGCUGGC-CGGCUGCa -3'
miRNA:   3'- ucuuuuacUUCGCGAUCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 208843 0.66 0.992431
Target:  5'- ------cGAAGCGCcAGCGCccGCCGg -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCGCGc-CGGCg -5'
1553 5' -52.8 NC_001347.2 + 227824 0.67 0.985712
Target:  5'- aAGAAAA-GAAGCaCaAGCuCGGUCGCa -3'
miRNA:   3'- -UCUUUUaCUUCGcGaUCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 228087 0.68 0.966595
Target:  5'- uGGAuaucGGUGAAGC---AGCGUGGCgGCg -3'
miRNA:   3'- -UCUu---UUACUUCGcgaUCGCGCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.