miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 152794 0.66 0.988801
Target:  5'- cGAAGAUGAcGUGCauGUGCaaccGGCCGUc -3'
miRNA:   3'- uCUUUUACUuCGCGauCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 152404 0.67 0.981807
Target:  5'- uGGAGAUGAGGCGgcguggaCUGGgacgaggaggaGgGGCCGCa -3'
miRNA:   3'- uCUUUUACUUCGC-------GAUCg----------CgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 149885 0.66 0.991344
Target:  5'- --------cGGCGC-AGgGCGGCCGUu -3'
miRNA:   3'- ucuuuuacuUCGCGaUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 148597 0.66 0.991344
Target:  5'- -uGAGcgGcGGCGUgaccggcGGUGCGGUCGCg -3'
miRNA:   3'- ucUUUuaCuUCGCGa------UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 142263 0.7 0.918026
Target:  5'- ------cGAGGCGCUGGC-CGcGUCGCu -3'
miRNA:   3'- ucuuuuaCUUCGCGAUCGcGC-CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 141803 0.66 0.988801
Target:  5'- uGAAGAccGcAGGCGUgccGGCGCccauGGCCGCc -3'
miRNA:   3'- uCUUUUa-C-UUCGCGa--UCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 140699 0.82 0.366624
Target:  5'- ----cAUGuuGGGCGCUAGCGUGGCCGUa -3'
miRNA:   3'- ucuuuUAC--UUCGCGAUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 140675 0.66 0.992431
Target:  5'- gGGAAuGAUGggGCGCg---GCGGUCGn -3'
miRNA:   3'- -UCUU-UUACuuCGCGaucgCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 139470 0.66 0.991344
Target:  5'- ------cGAGGCGgU-GCGCGuGCCGUu -3'
miRNA:   3'- ucuuuuaCUUCGCgAuCGCGC-CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 139320 0.66 0.990136
Target:  5'- cGAucugGcGGCGUUGuGCGCGGCgGUg -3'
miRNA:   3'- uCUuuuaCuUCGCGAU-CGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 138946 0.67 0.97763
Target:  5'- gAGGAAcuaaccGCGCUAGCGCcgguggGGcCCGCg -3'
miRNA:   3'- -UCUUUuacuu-CGCGAUCGCG------CC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 136314 0.7 0.923623
Target:  5'- ---------cGCGCUcccuaGGUGCGGCCGCc -3'
miRNA:   3'- ucuuuuacuuCGCGA-----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 136152 0.66 0.988801
Target:  5'- cGGGAGc--GGGCGCagcGUGCGGaCCGCa -3'
miRNA:   3'- -UCUUUuacUUCGCGau-CGCGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 129485 0.71 0.906117
Target:  5'- aAGAAAAaaaGAGCGCgucugcAGCGCGgcGCCGCc -3'
miRNA:   3'- -UCUUUUac-UUCGCGa-----UCGCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 129199 0.67 0.985712
Target:  5'- -------cAAGCGac-GCGUGGCCGCg -3'
miRNA:   3'- ucuuuuacUUCGCgauCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 126880 0.67 0.983941
Target:  5'- -----uUGggGCugGCcGGCuacgGCGGCCGCa -3'
miRNA:   3'- ucuuuuACuuCG--CGaUCG----CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 115508 0.71 0.886494
Target:  5'- cGAAAccgGUGccggccGCGCUAGCG-GGCUGCa -3'
miRNA:   3'- uCUUU---UACuu----CGCGAUCGCgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 113168 0.66 0.987017
Target:  5'- cGAAGAggGAAcGCGCgccccagccgccGGCGUGGCgGCc -3'
miRNA:   3'- uCUUUUa-CUU-CGCGa-----------UCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 113115 0.67 0.985712
Target:  5'- ------gGAAGCGC-AG-GCGGCUGUa -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 106280 0.66 0.988374
Target:  5'- cGGAAAAUGccgccgccaacgccGAGCuCUgucGGCGCcGCCGCu -3'
miRNA:   3'- -UCUUUUAC--------------UUCGcGA---UCGCGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.