miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 105973 0.7 0.934096
Target:  5'- ------cGAGccGCGCacgcccGCGCGGCCGCa -3'
miRNA:   3'- ucuuuuaCUU--CGCGau----CGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 105535 0.71 0.886494
Target:  5'- gGGAGAAgggcGAcGCGCUAuGCGUGcuGCCGCc -3'
miRNA:   3'- -UCUUUUa---CUuCGCGAU-CGCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 104332 0.68 0.959833
Target:  5'- -cGAGGUGGAcCGCUGGauccggcaCGCGGCCGg -3'
miRNA:   3'- ucUUUUACUUcGCGAUC--------GCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 102412 0.67 0.975166
Target:  5'- cAGGAAcccAUGGgcGGUGC-GGCGCG-CCGCa -3'
miRNA:   3'- -UCUUU---UACU--UCGCGaUCGCGCcGGCG- -5'
1553 5' -52.8 NC_001347.2 + 99983 0.75 0.720295
Target:  5'- ------cGAAGCGCcaucaugacgcgGGCGCGGUCGCg -3'
miRNA:   3'- ucuuuuaCUUCGCGa-----------UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 98189 0.71 0.906117
Target:  5'- gAGggGAUGAacacaGGCcCgaugUGGCuGCGGCCGCc -3'
miRNA:   3'- -UCuuUUACU-----UCGcG----AUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 94972 0.67 0.98201
Target:  5'- cGAGcGUGGAGaCGagcGCGCaGCCGCu -3'
miRNA:   3'- uCUUuUACUUC-GCgauCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 90901 0.67 0.97763
Target:  5'- aAGAuccaGGAGCGCUA-CGCGgaGCUGCa -3'
miRNA:   3'- -UCUuuuaCUUCGCGAUcGCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 82588 0.7 0.91219
Target:  5'- cGAAcguGUGAAGcCGCggcucGGCaCGGCCGCc -3'
miRNA:   3'- uCUUu--UACUUC-GCGa----UCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 81376 0.66 0.990136
Target:  5'- uAGGGAuUGAAGuCGCgcGCGCguacacacuuGGCCaGCa -3'
miRNA:   3'- -UCUUUuACUUC-GCGauCGCG----------CCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 77928 0.7 0.918026
Target:  5'- aAGAAGGUGcgcucgGAGCgGCUggaGGCGCaGCUGCg -3'
miRNA:   3'- -UCUUUUAC------UUCG-CGA---UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 77763 0.68 0.966595
Target:  5'- cGAGGcgGccgagcGGGCGCaauuuguacGCGCGGCCGUg -3'
miRNA:   3'- uCUUUuaC------UUCGCGau-------CGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 76720 0.66 0.992835
Target:  5'- cAGAucguUGAucugcaGGCGCUGgaugguggucuccucGUGCGGCuCGCa -3'
miRNA:   3'- -UCUuuu-ACU------UCGCGAU---------------CGCGCCG-GCG- -5'
1553 5' -52.8 NC_001347.2 + 76606 0.67 0.979909
Target:  5'- cGAGAGguccucgcAGGCGgcGGCuGCGGCCGCg -3'
miRNA:   3'- uCUUUUac------UUCGCgaUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 76163 0.7 0.91219
Target:  5'- gAGggGuUGcGGauggaGCUGG-GCGGCCGCa -3'
miRNA:   3'- -UCuuUuACuUCg----CGAUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 75402 0.66 0.987329
Target:  5'- -------cAAGCGggAGCgGCGGCCGUg -3'
miRNA:   3'- ucuuuuacUUCGCgaUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 68736 0.71 0.899808
Target:  5'- cGGAGGccGUGGAGCG--AGUGCcGCCGCa -3'
miRNA:   3'- -UCUUU--UACUUCGCgaUCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 68216 0.72 0.857198
Target:  5'- cAGAcGGcgGAAGCGgUAGaCGCGgcGCCGCa -3'
miRNA:   3'- -UCU-UUuaCUUCGCgAUC-GCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 66902 0.69 0.948014
Target:  5'- cGggGA-GGAGCaGCUGGUguuucgauuGCGGCgGCa -3'
miRNA:   3'- uCuuUUaCUUCG-CGAUCG---------CGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 60701 0.69 0.938496
Target:  5'- gGGAAGAUGGGaCG-UGGUaacgaugGCGGCCGCg -3'
miRNA:   3'- -UCUUUUACUUcGCgAUCG-------CGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.