miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 172064 0.66 0.992431
Target:  5'- ------gGAAGCGCU-GCGC-GCCGa -3'
miRNA:   3'- ucuuuuaCUUCGCGAuCGCGcCGGCg -5'
1553 5' -52.8 NC_001347.2 + 184735 0.66 0.992328
Target:  5'- gAGGAcGUGGcacaguucgcgguGGCGCUcGUGUGGCaGCa -3'
miRNA:   3'- -UCUUuUACU-------------UCGCGAuCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 178533 0.66 0.992431
Target:  5'- cGAAAAgcAGGUGCUggaAGCGC-GUCGCg -3'
miRNA:   3'- uCUUUUacUUCGCGA---UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 76720 0.66 0.992835
Target:  5'- cAGAucguUGAucugcaGGCGCUGgaugguggucuccucGUGCGGCuCGCa -3'
miRNA:   3'- -UCUuuu-ACU------UCGCGAU---------------CGCGCCG-GCG- -5'
1553 5' -52.8 NC_001347.2 + 168799 0.66 0.992431
Target:  5'- ----cAUGGAcGCGCgcGCGguggccaaaCGGCCGCg -3'
miRNA:   3'- ucuuuUACUU-CGCGauCGC---------GCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 166769 0.66 0.990136
Target:  5'- ------cGGAGCGCgccaugAGCuCGGCCaGCa -3'
miRNA:   3'- ucuuuuaCUUCGCGa-----UCGcGCCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 139320 0.66 0.990136
Target:  5'- cGAucugGcGGCGUUGuGCGCGGCgGUg -3'
miRNA:   3'- uCUuuuaCuUCGCGAU-CGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 229695 0.67 0.985712
Target:  5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3'
miRNA:   3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 227824 0.67 0.985712
Target:  5'- aAGAAAA-GAAGCaCaAGCuCGGUCGCa -3'
miRNA:   3'- -UCUUUUaCUUCGcGaUCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 129199 0.67 0.985712
Target:  5'- -------cAAGCGac-GCGUGGCCGCg -3'
miRNA:   3'- ucuuuuacUUCGCgauCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 113168 0.66 0.987017
Target:  5'- cGAAGAggGAAcGCGCgccccagccgccGGCGUGGCgGCc -3'
miRNA:   3'- uCUUUUa-CUU-CGCGa-----------UCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 40672 0.66 0.987329
Target:  5'- cGGGGAcgGGgguuGCGCUGGgGCcggGGCUGUu -3'
miRNA:   3'- -UCUUUuaCUu---CGCGAUCgCG---CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 106280 0.66 0.988374
Target:  5'- cGGAAAAUGccgccgccaacgccGAGCuCUgucGGCGCcGCCGCu -3'
miRNA:   3'- -UCUUUUAC--------------UUCGcGA---UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 75402 0.66 0.987329
Target:  5'- -------cAAGCGggAGCgGCGGCCGUg -3'
miRNA:   3'- ucuuuuacUUCGCgaUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 39178 0.66 0.988801
Target:  5'- ---------uGCGCaUGGCGCGGcCCGUg -3'
miRNA:   3'- ucuuuuacuuCGCG-AUCGCGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 136152 0.66 0.988801
Target:  5'- cGGGAGc--GGGCGCagcGUGCGGaCCGCa -3'
miRNA:   3'- -UCUUUuacUUCGCGau-CGCGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 141803 0.66 0.988801
Target:  5'- uGAAGAccGcAGGCGUgccGGCGCccauGGCCGCc -3'
miRNA:   3'- uCUUUUa-C-UUCGCGa--UCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 81376 0.66 0.990136
Target:  5'- uAGGGAuUGAAGuCGCgcGCGCguacacacuuGGCCaGCa -3'
miRNA:   3'- -UCUUUuACUUC-GCGauCGCG----------CCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 152794 0.66 0.988801
Target:  5'- cGAAGAUGAcGUGCauGUGCaaccGGCCGUc -3'
miRNA:   3'- uCUUUUACUuCGCGauCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 229042 0.66 0.990136
Target:  5'- --uGGGUGAAGCgGCgUGGUGUGGgUGCu -3'
miRNA:   3'- ucuUUUACUUCG-CG-AUCGCGCCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.