miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 31 0.68 0.969656
Target:  5'- cGGcgGUGuuuuGGGUGUgucggGGCGCGGCCGg -3'
miRNA:   3'- uCUuuUAC----UUCGCGa----UCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 216 0.67 0.985712
Target:  5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3'
miRNA:   3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 1573 0.69 0.956122
Target:  5'- cGGAcGAGUGGuuucggcacGGCGCgggcgaggUGGUGCGGCUGUa -3'
miRNA:   3'- -UCU-UUUACU---------UCGCG--------AUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 1910 0.67 0.983941
Target:  5'- -----cUGGcuGGCGCUgGGCGCGGugcugcCCGCg -3'
miRNA:   3'- ucuuuuACU--UCGCGA-UCGCGCC------GGCG- -5'
1553 5' -52.8 NC_001347.2 + 2016 0.72 0.849348
Target:  5'- cGGAGAcgGAGGcCGCcGGCGgGGaCGCg -3'
miRNA:   3'- -UCUUUuaCUUC-GCGaUCGCgCCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 2365 0.67 0.985712
Target:  5'- ------gGgcGCGCUGGCGCuGGgaCGCg -3'
miRNA:   3'- ucuuuuaCuuCGCGAUCGCG-CCg-GCG- -5'
1553 5' -52.8 NC_001347.2 + 2447 0.66 0.991344
Target:  5'- uGGGAGcgGccGCGCUGGgaCGC-GCUGCa -3'
miRNA:   3'- -UCUUUuaCuuCGCGAUC--GCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 2488 0.67 0.98201
Target:  5'- ------cGccGCGCUGugggcGCGCGaGCCGCa -3'
miRNA:   3'- ucuuuuaCuuCGCGAU-----CGCGC-CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 9202 0.69 0.948014
Target:  5'- gGGAAAA-GAGuCGCUGGCGaaacuCGGCCaGCa -3'
miRNA:   3'- -UCUUUUaCUUcGCGAUCGC-----GCCGG-CG- -5'
1553 5' -52.8 NC_001347.2 + 11984 0.68 0.969656
Target:  5'- uAGAGuuUGAGGacaucuuugGC-AGCGCGGCUGUc -3'
miRNA:   3'- -UCUUuuACUUCg--------CGaUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 15546 0.69 0.948014
Target:  5'- cGGugugGAAGCaGCcgAGCGCgaGGCCGCu -3'
miRNA:   3'- uCUuuuaCUUCG-CGa-UCGCG--CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 17316 0.69 0.952183
Target:  5'- aAGAGGAgggGAAGaCGCgguugccGCGCguauGGCCGCc -3'
miRNA:   3'- -UCUUUUa--CUUC-GCGau-----CGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 18805 0.69 0.938973
Target:  5'- aAGAGAcGUGcuGCGCUGGCaCGG-CGCa -3'
miRNA:   3'- -UCUUU-UACuuCGCGAUCGcGCCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 19337 0.75 0.712323
Target:  5'- cAGAGAAaGAGGC-CUgguuacAGCGCGGCCGg -3'
miRNA:   3'- -UCUUUUaCUUCGcGA------UCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 26229 0.7 0.91219
Target:  5'- cGAAGAUGccguGUGUUGGCuacgGCGGaCCGCg -3'
miRNA:   3'- uCUUUUACuu--CGCGAUCG----CGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 37057 0.68 0.966595
Target:  5'- cGGccGcgGAGGUGCUG--GCGGCCGUg -3'
miRNA:   3'- -UCuuUuaCUUCGCGAUcgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 37944 0.82 0.366624
Target:  5'- cGGGugcAGGUGcAGCGCgucccAGCGCGGCCGCu -3'
miRNA:   3'- -UCU---UUUACuUCGCGa----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 39178 0.66 0.988801
Target:  5'- ---------uGCGCaUGGCGCGGcCCGUg -3'
miRNA:   3'- ucuuuuacuuCGCG-AUCGCGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 40672 0.66 0.987329
Target:  5'- cGGGGAcgGGgguuGCGCUGGgGCcggGGCUGUu -3'
miRNA:   3'- -UCUUUuaCUu---CGCGAUCgCG---CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 44018 0.68 0.963323
Target:  5'- gAGGAAcgGAuaacGCGgUGGCGaCGGCaGCg -3'
miRNA:   3'- -UCUUUuaCUu---CGCgAUCGC-GCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.