miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 141803 0.66 0.988801
Target:  5'- uGAAGAccGcAGGCGUgccGGCGCccauGGCCGCc -3'
miRNA:   3'- uCUUUUa-C-UUCGCGa--UCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 152794 0.66 0.988801
Target:  5'- cGAAGAUGAcGUGCauGUGCaaccGGCCGUc -3'
miRNA:   3'- uCUUUUACUuCGCGauCGCG----CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 106280 0.66 0.988374
Target:  5'- cGGAAAAUGccgccgccaacgccGAGCuCUgucGGCGCcGCCGCu -3'
miRNA:   3'- -UCUUUUAC--------------UUCGcGA---UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 75402 0.66 0.987329
Target:  5'- -------cAAGCGggAGCgGCGGCCGUg -3'
miRNA:   3'- ucuuuuacUUCGCgaUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 40672 0.66 0.987329
Target:  5'- cGGGGAcgGGgguuGCGCUGGgGCcggGGCUGUu -3'
miRNA:   3'- -UCUUUuaCUu---CGCGAUCgCG---CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 113168 0.66 0.987017
Target:  5'- cGAAGAggGAAcGCGCgccccagccgccGGCGUGGCgGCc -3'
miRNA:   3'- uCUUUUa-CUU-CGCGa-----------UCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 172535 0.67 0.985712
Target:  5'- ------gGggGCccGCUggcucGGCGCGGCUGUa -3'
miRNA:   3'- ucuuuuaCuuCG--CGA-----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 113115 0.67 0.985712
Target:  5'- ------gGAAGCGC-AG-GCGGCUGUa -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 216 0.67 0.985712
Target:  5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3'
miRNA:   3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 2365 0.67 0.985712
Target:  5'- ------gGgcGCGCUGGCGCuGGgaCGCg -3'
miRNA:   3'- ucuuuuaCuuCGCGAUCGCG-CCg-GCG- -5'
1553 5' -52.8 NC_001347.2 + 229695 0.67 0.985712
Target:  5'- cGGGGuGUGucGGCGgUGuGCGCGGCCu- -3'
miRNA:   3'- -UCUUuUACu-UCGCgAU-CGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 227824 0.67 0.985712
Target:  5'- aAGAAAA-GAAGCaCaAGCuCGGUCGCa -3'
miRNA:   3'- -UCUUUUaCUUCGcGaUCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 129199 0.67 0.985712
Target:  5'- -------cAAGCGac-GCGUGGCCGCg -3'
miRNA:   3'- ucuuuuacUUCGCgauCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 198359 0.67 0.985542
Target:  5'- cGGguGAUGAguuucuGGCGCaggugggUGGCGCgcgGGUCGCg -3'
miRNA:   3'- -UCuuUUACU------UCGCG-------AUCGCG---CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 1910 0.67 0.983941
Target:  5'- -----cUGGcuGGCGCUgGGCGCGGugcugcCCGCg -3'
miRNA:   3'- ucuuuuACU--UCGCGA-UCGCGCC------GGCG- -5'
1553 5' -52.8 NC_001347.2 + 126880 0.67 0.983941
Target:  5'- -----uUGggGCugGCcGGCuacgGCGGCCGCa -3'
miRNA:   3'- ucuuuuACuuCG--CGaUCG----CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 2488 0.67 0.98201
Target:  5'- ------cGccGCGCUGugggcGCGCGaGCCGCa -3'
miRNA:   3'- ucuuuuaCuuCGCGAU-----CGCGC-CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 94972 0.67 0.98201
Target:  5'- cGAGcGUGGAGaCGagcGCGCaGCCGCu -3'
miRNA:   3'- uCUUuUACUUC-GCgauCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 193994 0.67 0.981807
Target:  5'- cGcuGGUGggGCaggauaaGUUGGUGCGGCUGg -3'
miRNA:   3'- uCuuUUACuuCG-------CGAUCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 152404 0.67 0.981807
Target:  5'- uGGAGAUGAGGCGgcguggaCUGGgacgaggaggaGgGGCCGCa -3'
miRNA:   3'- uCUUUUACUUCGC-------GAUCg----------CgCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.