miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15538 3' -41.8 NC_004003.1 + 149204 0.66 1
Target:  5'- aCCaAAACAAauaaUCAGA-GAUGGCGg -3'
miRNA:   3'- -GGcUUUGUUgaaaAGUCUaCUACUGC- -5'
15538 3' -41.8 NC_004003.1 + 607 1.16 0.039322
Target:  5'- aCCGAAACAACUUUUCAGAUGAUGACGa -3'
miRNA:   3'- -GGCUUUGUUGAAAAGUCUACUACUGC- -5'
15538 3' -41.8 NC_004003.1 + 148993 1.16 0.039322
Target:  5'- aCCGAAACAACUUUUCAGAUGAUGACGa -3'
miRNA:   3'- -GGCUUUGUUGAAAAGUCUACUACUGC- -5'
15538 3' -41.8 NC_004003.1 + 124825 0.71 0.999996
Target:  5'- gCCGAAGCAAUgagUUCuGAUGuuuGUGAUa -3'
miRNA:   3'- -GGCUUUGUUGaa-AAGuCUAC---UACUGc -5'
15538 3' -41.8 NC_004003.1 + 117888 0.68 1
Target:  5'- aCGAAAauauUUUUUUAGAUGAUGAa- -3'
miRNA:   3'- gGCUUUguu-GAAAAGUCUACUACUgc -5'
15538 3' -41.8 NC_004003.1 + 396 0.66 1
Target:  5'- aCCaAAACAAauaaUCAGA-GAUGGCGg -3'
miRNA:   3'- -GGcUUUGUUgaaaAGUCUaCUACUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.