Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1554 | 3' | -55.2 | NC_001347.2 | + | 31674 | 0.68 | 0.930015 |
Target: 5'- gGUCGGC-UgGUCGGGCcgUCGCgGACg -3' miRNA: 3'- gUAGCCGuGgUAGCCUG--AGCGgUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 24635 | 0.68 | 0.934933 |
Target: 5'- --cUGGUGCUAUU--ACUCGCCGGCCu -3' miRNA: 3'- guaGCCGUGGUAGccUGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 16496 | 0.68 | 0.939627 |
Target: 5'- -uUCGGCugCuugaCGGACU-GCUGGCCc -3' miRNA: 3'- guAGCCGugGua--GCCUGAgCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 90537 | 0.68 | 0.934933 |
Target: 5'- aAUCGGCgGCCGga-GACUgCGCCGACa -3' miRNA: 3'- gUAGCCG-UGGUagcCUGA-GCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 172025 | 0.69 | 0.88931 |
Target: 5'- gUAUCGGUugCcgCGGcucuccaUCGCCAGCg -3' miRNA: 3'- -GUAGCCGugGuaGCCug-----AGCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 126858 | 0.69 | 0.902048 |
Target: 5'- -cUCGGCgACCAgcccgcacggcuUgGGGCUgGCCGGCUa -3' miRNA: 3'- guAGCCG-UGGU------------AgCCUGAgCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 142912 | 0.69 | 0.895787 |
Target: 5'- gCGUCGGCGCC--CGGGC-CGCCu--- -3' miRNA: 3'- -GUAGCCGUGGuaGCCUGaGCGGuugg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 166173 | 0.69 | 0.908089 |
Target: 5'- uCAUCGGCGCUagcgcgcgauGUCGGugcaguagGCUCGUCGcuuCCg -3' miRNA: 3'- -GUAGCCGUGG----------UAGCC--------UGAGCGGUu--GG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 106309 | 0.69 | 0.913908 |
Target: 5'- uGUCGGCGCCGcCGcucacuuucCUCGCC-ACCa -3' miRNA: 3'- gUAGCCGUGGUaGCcu-------GAGCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 228699 | 0.69 | 0.913908 |
Target: 5'- aGUCGcuuGCGCUGUCGGcccAgUCGCCAccGCCg -3' miRNA: 3'- gUAGC---CGUGGUAGCC---UgAGCGGU--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 187955 | 0.7 | 0.8538 |
Target: 5'- aGUCGGCGCaCAcguuuUUGGGCgcgCGCUcGCCg -3' miRNA: 3'- gUAGCCGUG-GU-----AGCCUGa--GCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 106204 | 0.7 | 0.8538 |
Target: 5'- -uUCGGa---AUCGGGCcCGCCGGCCa -3' miRNA: 3'- guAGCCguggUAGCCUGaGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 78379 | 0.7 | 0.8538 |
Target: 5'- --gCGGCGCCGUggugggaGGACcCGCgGGCCa -3' miRNA: 3'- guaGCCGUGGUAg------CCUGaGCGgUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 14011 | 0.7 | 0.851512 |
Target: 5'- cUAUCGGCggccggggcugugaACCGcucaguggcUCGGAC-CGCCGGCUg -3' miRNA: 3'- -GUAGCCG--------------UGGU---------AGCCUGaGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 149674 | 0.71 | 0.796343 |
Target: 5'- gAUCGGCACCugCGGGCagGUgGGCCc -3' miRNA: 3'- gUAGCCGUGGuaGCCUGagCGgUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 192229 | 0.71 | 0.821957 |
Target: 5'- --aCGGUguauauaaACCgcGUCGGcCUCGCCGGCCc -3' miRNA: 3'- guaGCCG--------UGG--UAGCCuGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 161034 | 0.71 | 0.821957 |
Target: 5'- aAUCGGUgACCAggugaaUGGGUUCGCCGGCCu -3' miRNA: 3'- gUAGCCG-UGGUa-----GCCUGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 197069 | 0.71 | 0.805031 |
Target: 5'- -cUCGGCGCUcUCGGACgccgagCugagcaaccacGCCAACCg -3' miRNA: 3'- guAGCCGUGGuAGCCUGa-----G-----------CGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 166307 | 0.72 | 0.750962 |
Target: 5'- --aCGGCGCCAUUGGAacguugCGCCuGCUc -3' miRNA: 3'- guaGCCGUGGUAGCCUga----GCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 195187 | 0.72 | 0.750026 |
Target: 5'- --aCGGCguuuuugcuucucGCCGUUGGACUCGagcgCAACCg -3' miRNA: 3'- guaGCCG-------------UGGUAGCCUGAGCg---GUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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