Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 1554 | 3' | -55.2 | NC_001347.2 | + | 195187 | 0.72 | 0.750026 |
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Target: 5'- --aCGGCguuuuugcuucucGCCGUUGGACUCGagcgCAACCg -3' miRNA: 3'- guaGCCG-------------UGGUAGCCUGAGCg---GUUGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 41242 | 0.73 | 0.73206 |
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Target: 5'- -uUCGGaACCAU-GGGC-CGCCAACCu -3' miRNA: 3'- guAGCCgUGGUAgCCUGaGCGGUUGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 97146 | 0.74 | 0.633979 |
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Target: 5'- --gCGGCAUCcUCGGGCUUuCCGGCCa -3' miRNA: 3'- guaGCCGUGGuAGCCUGAGcGGUUGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 100191 | 0.74 | 0.66377 |
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Target: 5'- --gCGGCGCCG-CGGcCUCGCCcagguAGCCg -3' miRNA: 3'- guaGCCGUGGUaGCCuGAGCGG-----UUGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 107134 | 0.75 | 0.594269 |
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Target: 5'- -cUCGGgGCCGcgUGGACUCaCCAGCCg -3' miRNA: 3'- guAGCCgUGGUa-GCCUGAGcGGUUGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 19304 | 0.76 | 0.564737 |
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Target: 5'- ---aGGCucccuacCCGUCGGAagaCUCGCCGACCa -3' miRNA: 3'- guagCCGu------GGUAGCCU---GAGCGGUUGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 203295 | 0.76 | 0.545261 |
|
Target: 5'- cCAUCuGuGCGCauggacuuUCGGGCUCGCCGGCCc -3' miRNA: 3'- -GUAG-C-CGUGgu------AGCCUGAGCGGUUGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 134328 | 0.78 | 0.434327 |
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Target: 5'- aCAggCGGCgACCG-CGGACUCGCCucgGCCa -3' miRNA: 3'- -GUa-GCCG-UGGUaGCCUGAGCGGu--UGG- -5' |
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| 1554 | 3' | -55.2 | NC_001347.2 | + | 197507 | 1.11 | 0.004266 |
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Target: 5'- uCAUCGGCACCAUCGGACUCGCCAACCu -3' miRNA: 3'- -GUAGCCGUGGUAGCCUGAGCGGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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