miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 3' -55.2 NC_001347.2 + 126858 0.69 0.902048
Target:  5'- -cUCGGCgACCAgcccgcacggcuUgGGGCUgGCCGGCUa -3'
miRNA:   3'- guAGCCG-UGGU------------AgCCUGAgCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 228699 0.69 0.913908
Target:  5'- aGUCGcuuGCGCUGUCGGcccAgUCGCCAccGCCg -3'
miRNA:   3'- gUAGC---CGUGGUAGCC---UgAGCGGU--UGG- -5'
1554 3' -55.2 NC_001347.2 + 142912 0.69 0.895787
Target:  5'- gCGUCGGCGCC--CGGGC-CGCCu--- -3'
miRNA:   3'- -GUAGCCGUGGuaGCCUGaGCGGuugg -5'
1554 3' -55.2 NC_001347.2 + 172025 0.69 0.88931
Target:  5'- gUAUCGGUugCcgCGGcucuccaUCGCCAGCg -3'
miRNA:   3'- -GUAGCCGugGuaGCCug-----AGCGGUUGg -5'
1554 3' -55.2 NC_001347.2 + 166173 0.69 0.908089
Target:  5'- uCAUCGGCGCUagcgcgcgauGUCGGugcaguagGCUCGUCGcuuCCg -3'
miRNA:   3'- -GUAGCCGUGG----------UAGCC--------UGAGCGGUu--GG- -5'
1554 3' -55.2 NC_001347.2 + 109478 0.68 0.924872
Target:  5'- --gCGGCGCCAUggCGGGCgccuccacuucCGCgGGCCg -3'
miRNA:   3'- guaGCCGUGGUA--GCCUGa----------GCGgUUGG- -5'
1554 3' -55.2 NC_001347.2 + 184203 0.68 0.934933
Target:  5'- uCGUCGGCGCgAUgccgcaGGGCggUCGCUAGCg -3'
miRNA:   3'- -GUAGCCGUGgUAg-----CCUG--AGCGGUUGg -5'
1554 3' -55.2 NC_001347.2 + 24635 0.68 0.934933
Target:  5'- --cUGGUGCUAUU--ACUCGCCGGCCu -3'
miRNA:   3'- guaGCCGUGGUAGccUGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 16496 0.68 0.939627
Target:  5'- -uUCGGCugCuugaCGGACU-GCUGGCCc -3'
miRNA:   3'- guAGCCGugGua--GCCUGAgCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 88150 0.68 0.919502
Target:  5'- aCGUCGGCACag-CGGgguGCggGCCAGCg -3'
miRNA:   3'- -GUAGCCGUGguaGCC---UGagCGGUUGg -5'
1554 3' -55.2 NC_001347.2 + 90537 0.68 0.934933
Target:  5'- aAUCGGCgGCCGga-GACUgCGCCGACa -3'
miRNA:   3'- gUAGCCG-UGGUagcCUGA-GCGGUUGg -5'
1554 3' -55.2 NC_001347.2 + 31674 0.68 0.930015
Target:  5'- gGUCGGC-UgGUCGGGCcgUCGCgGACg -3'
miRNA:   3'- gUAGCCGuGgUAGCCUG--AGCGgUUGg -5'
1554 3' -55.2 NC_001347.2 + 174168 0.68 0.919502
Target:  5'- gAUCGGaCACUuuaggCGGcGCagCGCCAGCCu -3'
miRNA:   3'- gUAGCC-GUGGua---GCC-UGa-GCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 25375 0.68 0.919502
Target:  5'- --aUGGCGCCGUgGGuuggcaGCUgGCCGGCUu -3'
miRNA:   3'- guaGCCGUGGUAgCC------UGAgCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 38727 0.68 0.919502
Target:  5'- -cUCGGCGCgCAgcaacgucugUCGGAg-CGCCGGCUg -3'
miRNA:   3'- guAGCCGUG-GU----------AGCCUgaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 208710 0.67 0.948344
Target:  5'- aCGUCGGcCACCAgcgccguggucUCGG--UCGCCAGgCu -3'
miRNA:   3'- -GUAGCC-GUGGU-----------AGCCugAGCGGUUgG- -5'
1554 3' -55.2 NC_001347.2 + 1710 0.67 0.948344
Target:  5'- --aCGGCGC--UCGGACgggagcugCGCCGGCg -3'
miRNA:   3'- guaGCCGUGguAGCCUGa-------GCGGUUGg -5'
1554 3' -55.2 NC_001347.2 + 189888 0.67 0.952372
Target:  5'- --cCGGCAgCAgcCGGGC-CGCCucGACCa -3'
miRNA:   3'- guaGCCGUgGUa-GCCUGaGCGG--UUGG- -5'
1554 3' -55.2 NC_001347.2 + 158165 0.67 0.952372
Target:  5'- --gCGaGCGCCAUCuGGACgcgCGCUcGCUg -3'
miRNA:   3'- guaGC-CGUGGUAG-CCUGa--GCGGuUGG- -5'
1554 3' -55.2 NC_001347.2 + 38579 0.67 0.959782
Target:  5'- --gCGGCGCCGacgcgaacggcUCGuACUgCGCCAGCUc -3'
miRNA:   3'- guaGCCGUGGU-----------AGCcUGA-GCGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.