Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1554 | 3' | -55.2 | NC_001347.2 | + | 134401 | 0.66 | 0.972134 |
Target: 5'- --aUGGCGCCGcUCGGccagACUCGUCGAg- -3' miRNA: 3'- guaGCCGUGGU-AGCC----UGAGCGGUUgg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 135610 | 0.66 | 0.97716 |
Target: 5'- uCGUCGGCcgACCGcCGcGACcC-CCAGCCg -3' miRNA: 3'- -GUAGCCG--UGGUaGC-CUGaGcGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 142912 | 0.69 | 0.895787 |
Target: 5'- gCGUCGGCGCC--CGGGC-CGCCu--- -3' miRNA: 3'- -GUAGCCGUGGuaGCCUGaGCGGuugg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 149674 | 0.71 | 0.796343 |
Target: 5'- gAUCGGCACCugCGGGCagGUgGGCCc -3' miRNA: 3'- gUAGCCGUGGuaGCCUGagCGgUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 153220 | 0.67 | 0.959782 |
Target: 5'- gGUCGuGCAgCGUgaggcgCGGGCgcgCGUCGGCCg -3' miRNA: 3'- gUAGC-CGUgGUA------GCCUGa--GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 156639 | 0.67 | 0.948344 |
Target: 5'- --gCGGCGCCGcugcCGGGCcUCGgCCGccGCCg -3' miRNA: 3'- guaGCCGUGGUa---GCCUG-AGC-GGU--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 158165 | 0.67 | 0.952372 |
Target: 5'- --gCGaGCGCCAUCuGGACgcgCGCUcGCUg -3' miRNA: 3'- guaGC-CGUGGUAG-CCUGa--GCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 161034 | 0.71 | 0.821957 |
Target: 5'- aAUCGGUgACCAggugaaUGGGUUCGCCGGCCu -3' miRNA: 3'- gUAGCCG-UGGUa-----GCCUGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 166173 | 0.69 | 0.908089 |
Target: 5'- uCAUCGGCGCUagcgcgcgauGUCGGugcaguagGCUCGUCGcuuCCg -3' miRNA: 3'- -GUAGCCGUGG----------UAGCC--------UGAGCGGUu--GG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 166307 | 0.72 | 0.750962 |
Target: 5'- --aCGGCGCCAUUGGAacguugCGCCuGCUc -3' miRNA: 3'- guaGCCGUGGUAGCCUga----GCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 172025 | 0.69 | 0.88931 |
Target: 5'- gUAUCGGUugCcgCGGcucuccaUCGCCAGCg -3' miRNA: 3'- -GUAGCCGugGuaGCCug-----AGCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 174168 | 0.68 | 0.919502 |
Target: 5'- gAUCGGaCACUuuaggCGGcGCagCGCCAGCCu -3' miRNA: 3'- gUAGCC-GUGGua---GCC-UGa-GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 175290 | 0.67 | 0.963171 |
Target: 5'- aCcgCGGaCGCCGUCGGuAC-CGUCuccACCa -3' miRNA: 3'- -GuaGCC-GUGGUAGCC-UGaGCGGu--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 184203 | 0.68 | 0.934933 |
Target: 5'- uCGUCGGCGCgAUgccgcaGGGCggUCGCUAGCg -3' miRNA: 3'- -GUAGCCGUGgUAg-----CCUG--AGCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 187955 | 0.7 | 0.8538 |
Target: 5'- aGUCGGCGCaCAcguuuUUGGGCgcgCGCUcGCCg -3' miRNA: 3'- gUAGCCGUG-GU-----AGCCUGa--GCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 188988 | 0.66 | 0.974738 |
Target: 5'- --aCGGCGCCGUUgcccggGGAUaugaacccCGCCAACUg -3' miRNA: 3'- guaGCCGUGGUAG------CCUGa-------GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 189888 | 0.67 | 0.952372 |
Target: 5'- --cCGGCAgCAgcCGGGC-CGCCucGACCa -3' miRNA: 3'- guaGCCGUgGUa-GCCUGaGCGG--UUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 192229 | 0.71 | 0.821957 |
Target: 5'- --aCGGUguauauaaACCgcGUCGGcCUCGCCGGCCc -3' miRNA: 3'- guaGCCG--------UGG--UAGCCuGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 193434 | 0.66 | 0.966356 |
Target: 5'- uCAUUGGCACgGUCucGCaCGCCAccuGCCg -3' miRNA: 3'- -GUAGCCGUGgUAGccUGaGCGGU---UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 194093 | 0.67 | 0.948344 |
Target: 5'- gCAUCGGC-CCcgUGGaccgcaGCUCGCUguacgaGGCCa -3' miRNA: 3'- -GUAGCCGuGGuaGCC------UGAGCGG------UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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