miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 3' -55.2 NC_001347.2 + 166173 0.69 0.908089
Target:  5'- uCAUCGGCGCUagcgcgcgauGUCGGugcaguagGCUCGUCGcuuCCg -3'
miRNA:   3'- -GUAGCCGUGG----------UAGCC--------UGAGCGGUu--GG- -5'
1554 3' -55.2 NC_001347.2 + 161034 0.71 0.821957
Target:  5'- aAUCGGUgACCAggugaaUGGGUUCGCCGGCCu -3'
miRNA:   3'- gUAGCCG-UGGUa-----GCCUGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 158165 0.67 0.952372
Target:  5'- --gCGaGCGCCAUCuGGACgcgCGCUcGCUg -3'
miRNA:   3'- guaGC-CGUGGUAG-CCUGa--GCGGuUGG- -5'
1554 3' -55.2 NC_001347.2 + 156639 0.67 0.948344
Target:  5'- --gCGGCGCCGcugcCGGGCcUCGgCCGccGCCg -3'
miRNA:   3'- guaGCCGUGGUa---GCCUG-AGC-GGU--UGG- -5'
1554 3' -55.2 NC_001347.2 + 153220 0.67 0.959782
Target:  5'- gGUCGuGCAgCGUgaggcgCGGGCgcgCGUCGGCCg -3'
miRNA:   3'- gUAGC-CGUgGUA------GCCUGa--GCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 149674 0.71 0.796343
Target:  5'- gAUCGGCACCugCGGGCagGUgGGCCc -3'
miRNA:   3'- gUAGCCGUGGuaGCCUGagCGgUUGG- -5'
1554 3' -55.2 NC_001347.2 + 142912 0.69 0.895787
Target:  5'- gCGUCGGCGCC--CGGGC-CGCCu--- -3'
miRNA:   3'- -GUAGCCGUGGuaGCCUGaGCGGuugg -5'
1554 3' -55.2 NC_001347.2 + 135610 0.66 0.97716
Target:  5'- uCGUCGGCcgACCGcCGcGACcC-CCAGCCg -3'
miRNA:   3'- -GUAGCCG--UGGUaGC-CUGaGcGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 134401 0.66 0.972134
Target:  5'- --aUGGCGCCGcUCGGccagACUCGUCGAg- -3'
miRNA:   3'- guaGCCGUGGU-AGCC----UGAGCGGUUgg -5'
1554 3' -55.2 NC_001347.2 + 134328 0.78 0.434327
Target:  5'- aCAggCGGCgACCG-CGGACUCGCCucgGCCa -3'
miRNA:   3'- -GUa-GCCG-UGGUaGCCUGAGCGGu--UGG- -5'
1554 3' -55.2 NC_001347.2 + 129150 0.67 0.948344
Target:  5'- uCAUgGGCACCG-CGGGCUUccgugGCgGACa -3'
miRNA:   3'- -GUAgCCGUGGUaGCCUGAG-----CGgUUGg -5'
1554 3' -55.2 NC_001347.2 + 128994 0.67 0.963171
Target:  5'- cCGUCGGCGCCGccUCGcaucaUCaCCGACCc -3'
miRNA:   3'- -GUAGCCGUGGU--AGCcug--AGcGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 126934 0.67 0.959782
Target:  5'- -uUCGGCACCuccacgcagCuGGCgCGCCAGCUc -3'
miRNA:   3'- guAGCCGUGGua-------GcCUGaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 126858 0.69 0.902048
Target:  5'- -cUCGGCgACCAgcccgcacggcuUgGGGCUgGCCGGCUa -3'
miRNA:   3'- guAGCCG-UGGU------------AgCCUGAgCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 117802 0.66 0.972134
Target:  5'- ---gGGCaacgGCCGcUCGGcgcACUgCGCCAGCCa -3'
miRNA:   3'- guagCCG----UGGU-AGCC---UGA-GCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 109478 0.68 0.924872
Target:  5'- --gCGGCGCCAUggCGGGCgccuccacuucCGCgGGCCg -3'
miRNA:   3'- guaGCCGUGGUA--GCCUGa----------GCGgUUGG- -5'
1554 3' -55.2 NC_001347.2 + 107134 0.75 0.594269
Target:  5'- -cUCGGgGCCGcgUGGACUCaCCAGCCg -3'
miRNA:   3'- guAGCCgUGGUa-GCCUGAGcGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 106309 0.69 0.913908
Target:  5'- uGUCGGCGCCGcCGcucacuuucCUCGCC-ACCa -3'
miRNA:   3'- gUAGCCGUGGUaGCcu-------GAGCGGuUGG- -5'
1554 3' -55.2 NC_001347.2 + 106204 0.7 0.8538
Target:  5'- -uUCGGa---AUCGGGCcCGCCGGCCa -3'
miRNA:   3'- guAGCCguggUAGCCUGaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 100191 0.74 0.66377
Target:  5'- --gCGGCGCCG-CGGcCUCGCCcagguAGCCg -3'
miRNA:   3'- guaGCCGUGGUaGCCuGAGCGG-----UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.