Results 61 - 69 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1554 | 3' | -55.2 | NC_001347.2 | + | 38579 | 0.67 | 0.959782 |
Target: 5'- --gCGGCGCCGacgcgaacggcUCGuACUgCGCCAGCUc -3' miRNA: 3'- guaGCCGUGGU-----------AGCcUGA-GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 126934 | 0.67 | 0.959782 |
Target: 5'- -uUCGGCACCuccacgcagCuGGCgCGCCAGCUc -3' miRNA: 3'- guAGCCGUGGua-------GcCUGaGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 65875 | 0.67 | 0.959782 |
Target: 5'- -uUCGGCACgCuggCGGGCcgacCGCCGccGCCc -3' miRNA: 3'- guAGCCGUG-Gua-GCCUGa---GCGGU--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 153220 | 0.67 | 0.959782 |
Target: 5'- gGUCGuGCAgCGUgaggcgCGGGCgcgCGUCGGCCg -3' miRNA: 3'- gUAGC-CGUgGUA------GCCUGa--GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 88541 | 0.67 | 0.963171 |
Target: 5'- --aCGcCGCCGcCGGcCUCGUCGGCCa -3' miRNA: 3'- guaGCcGUGGUaGCCuGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 128994 | 0.67 | 0.963171 |
Target: 5'- cCGUCGGCGCCGccUCGcaucaUCaCCGACCc -3' miRNA: 3'- -GUAGCCGUGGU--AGCcug--AGcGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 222127 | 0.66 | 0.966047 |
Target: 5'- --aCGGCgGCUAUUGGAUUCGgCAuuggugcGCCg -3' miRNA: 3'- guaGCCG-UGGUAGCCUGAGCgGU-------UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 175290 | 0.67 | 0.963171 |
Target: 5'- aCcgCGGaCGCCGUCGGuAC-CGUCuccACCa -3' miRNA: 3'- -GuaGCC-GUGGUAGCC-UGaGCGGu--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 2222 | 0.66 | 0.97716 |
Target: 5'- --cCGGCGgCGUCGGggaccgugccGCgCGCCAugCu -3' miRNA: 3'- guaGCCGUgGUAGCC----------UGaGCGGUugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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