Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1554 | 3' | -55.2 | NC_001347.2 | + | 28104 | 0.66 | 0.976925 |
Target: 5'- --aCGGCACUGUCGuguuccaGACcagCGCCAccauaGCCa -3' miRNA: 3'- guaGCCGUGGUAGC-------CUGa--GCGGU-----UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 82879 | 0.66 | 0.975728 |
Target: 5'- uCAUCGGCGcgcccCCAUcgccucccgagcgagCGGGC-CGCCGcuaucGCCa -3' miRNA: 3'- -GUAGCCGU-----GGUA---------------GCCUGaGCGGU-----UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 135610 | 0.66 | 0.97716 |
Target: 5'- uCGUCGGCcgACCGcCGcGACcC-CCAGCCg -3' miRNA: 3'- -GUAGCCG--UGGUaGC-CUGaGcGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 17036 | 0.66 | 0.97716 |
Target: 5'- uCcgCGGCgACUucgCGGAacgUCGUCGACCg -3' miRNA: 3'- -GuaGCCG-UGGua-GCCUg--AGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 41279 | 0.66 | 0.97716 |
Target: 5'- uGUUGGCgcGCCAacgcgaCGGcCUCGCUGACUg -3' miRNA: 3'- gUAGCCG--UGGUa-----GCCuGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 200213 | 0.66 | 0.969342 |
Target: 5'- --aCGG-GCCccCGGGCUCGCCcACUg -3' miRNA: 3'- guaGCCgUGGuaGCCUGAGCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 37613 | 0.66 | 0.969342 |
Target: 5'- ---gGGCGCCA--GGACUCGUCAucguAUCg -3' miRNA: 3'- guagCCGUGGUagCCUGAGCGGU----UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 1710 | 0.67 | 0.948344 |
Target: 5'- --aCGGCGC--UCGGACgggagcugCGCCGGCg -3' miRNA: 3'- guaGCCGUGguAGCCUGa-------GCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 189888 | 0.67 | 0.952372 |
Target: 5'- --cCGGCAgCAgcCGGGC-CGCCucGACCa -3' miRNA: 3'- guaGCCGUgGUa-GCCUGaGCGG--UUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 158165 | 0.67 | 0.952372 |
Target: 5'- --gCGaGCGCCAUCuGGACgcgCGCUcGCUg -3' miRNA: 3'- guaGC-CGUGGUAG-CCUGa--GCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 38579 | 0.67 | 0.959782 |
Target: 5'- --gCGGCGCCGacgcgaacggcUCGuACUgCGCCAGCUc -3' miRNA: 3'- guaGCCGUGGU-----------AGCcUGA-GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 126934 | 0.67 | 0.959782 |
Target: 5'- -uUCGGCACCuccacgcagCuGGCgCGCCAGCUc -3' miRNA: 3'- guAGCCGUGGua-------GcCUGaGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 65875 | 0.67 | 0.959782 |
Target: 5'- -uUCGGCACgCuggCGGGCcgacCGCCGccGCCc -3' miRNA: 3'- guAGCCGUG-Gua-GCCUGa---GCGGU--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 153220 | 0.67 | 0.959782 |
Target: 5'- gGUCGuGCAgCGUgaggcgCGGGCgcgCGUCGGCCg -3' miRNA: 3'- gUAGC-CGUgGUA------GCCUGa--GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 88541 | 0.67 | 0.963171 |
Target: 5'- --aCGcCGCCGcCGGcCUCGUCGGCCa -3' miRNA: 3'- guaGCcGUGGUaGCCuGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 128994 | 0.67 | 0.963171 |
Target: 5'- cCGUCGGCGCCGccUCGcaucaUCaCCGACCc -3' miRNA: 3'- -GUAGCCGUGGU--AGCcug--AGcGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 222127 | 0.66 | 0.966047 |
Target: 5'- --aCGGCgGCUAUUGGAUUCGgCAuuggugcGCCg -3' miRNA: 3'- guaGCCG-UGGUAGCCUGAGCgGU-------UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 175290 | 0.67 | 0.963171 |
Target: 5'- aCcgCGGaCGCCGUCGGuAC-CGUCuccACCa -3' miRNA: 3'- -GuaGCC-GUGGUAGCC-UGaGCGGu--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 198411 | 0.66 | 0.966356 |
Target: 5'- gAUCGcGCACCAUaa-ACUCGCCuACg -3' miRNA: 3'- gUAGC-CGUGGUAgccUGAGCGGuUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 193434 | 0.66 | 0.966356 |
Target: 5'- uCAUUGGCACgGUCucGCaCGCCAccuGCCg -3' miRNA: 3'- -GUAGCCGUGgUAGccUGaGCGGU---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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