Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1554 | 3' | -55.2 | NC_001347.2 | + | 128994 | 0.67 | 0.963171 |
Target: 5'- cCGUCGGCGCCGccUCGcaucaUCaCCGACCc -3' miRNA: 3'- -GUAGCCGUGGU--AGCcug--AGcGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 175290 | 0.67 | 0.963171 |
Target: 5'- aCcgCGGaCGCCGUCGGuAC-CGUCuccACCa -3' miRNA: 3'- -GuaGCC-GUGGUAGCC-UGaGCGGu--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 153220 | 0.67 | 0.959782 |
Target: 5'- gGUCGuGCAgCGUgaggcgCGGGCgcgCGUCGGCCg -3' miRNA: 3'- gUAGC-CGUgGUA------GCCUGa--GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 65875 | 0.67 | 0.959782 |
Target: 5'- -uUCGGCACgCuggCGGGCcgacCGCCGccGCCc -3' miRNA: 3'- guAGCCGUG-Gua-GCCUGa---GCGGU--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 126934 | 0.67 | 0.959782 |
Target: 5'- -uUCGGCACCuccacgcagCuGGCgCGCCAGCUc -3' miRNA: 3'- guAGCCGUGGua-------GcCUGaGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 38579 | 0.67 | 0.959782 |
Target: 5'- --gCGGCGCCGacgcgaacggcUCGuACUgCGCCAGCUc -3' miRNA: 3'- guaGCCGUGGU-----------AGCcUGA-GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 158165 | 0.67 | 0.952372 |
Target: 5'- --gCGaGCGCCAUCuGGACgcgCGCUcGCUg -3' miRNA: 3'- guaGC-CGUGGUAG-CCUGa--GCGGuUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 189888 | 0.67 | 0.952372 |
Target: 5'- --cCGGCAgCAgcCGGGC-CGCCucGACCa -3' miRNA: 3'- guaGCCGUgGUa-GCCUGaGCGG--UUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 129150 | 0.67 | 0.948344 |
Target: 5'- uCAUgGGCACCG-CGGGCUUccgugGCgGACa -3' miRNA: 3'- -GUAgCCGUGGUaGCCUGAG-----CGgUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 194093 | 0.67 | 0.948344 |
Target: 5'- gCAUCGGC-CCcgUGGaccgcaGCUCGCUguacgaGGCCa -3' miRNA: 3'- -GUAGCCGuGGuaGCC------UGAGCGG------UUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 156639 | 0.67 | 0.948344 |
Target: 5'- --gCGGCGCCGcugcCGGGCcUCGgCCGccGCCg -3' miRNA: 3'- guaGCCGUGGUa---GCCUG-AGC-GGU--UGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 208710 | 0.67 | 0.948344 |
Target: 5'- aCGUCGGcCACCAgcgccguggucUCGG--UCGCCAGgCu -3' miRNA: 3'- -GUAGCC-GUGGU-----------AGCCugAGCGGUUgG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 1710 | 0.67 | 0.948344 |
Target: 5'- --aCGGCGC--UCGGACgggagcugCGCCGGCg -3' miRNA: 3'- guaGCCGUGguAGCCUGa-------GCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 1342 | 0.67 | 0.944096 |
Target: 5'- gCGUgGGCGCgA-CGGACcugCGUCAACUg -3' miRNA: 3'- -GUAgCCGUGgUaGCCUGa--GCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 16496 | 0.68 | 0.939627 |
Target: 5'- -uUCGGCugCuugaCGGACU-GCUGGCCc -3' miRNA: 3'- guAGCCGugGua--GCCUGAgCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 184203 | 0.68 | 0.934933 |
Target: 5'- uCGUCGGCGCgAUgccgcaGGGCggUCGCUAGCg -3' miRNA: 3'- -GUAGCCGUGgUAg-----CCUG--AGCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 24635 | 0.68 | 0.934933 |
Target: 5'- --cUGGUGCUAUU--ACUCGCCGGCCu -3' miRNA: 3'- guaGCCGUGGUAGccUGAGCGGUUGG- -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 90537 | 0.68 | 0.934933 |
Target: 5'- aAUCGGCgGCCGga-GACUgCGCCGACa -3' miRNA: 3'- gUAGCCG-UGGUagcCUGA-GCGGUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 31674 | 0.68 | 0.930015 |
Target: 5'- gGUCGGC-UgGUCGGGCcgUCGCgGACg -3' miRNA: 3'- gUAGCCGuGgUAGCCUG--AGCGgUUGg -5' |
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1554 | 3' | -55.2 | NC_001347.2 | + | 109478 | 0.68 | 0.924872 |
Target: 5'- --gCGGCGCCAUggCGGGCgccuccacuucCGCgGGCCg -3' miRNA: 3'- guaGCCGUGGUA--GCCUGa----------GCGgUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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