Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1554 | 5' | -64.1 | NC_001347.2 | + | 77863 | 0.67 | 0.611388 |
Target: 5'- --uGCUGCAG-GUGGCCGaGCGccugGGCGc -3' miRNA: 3'- cccUGGCGUCgCACCGGC-CGCa---CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 2199 | 0.67 | 0.611388 |
Target: 5'- uGGGuuCGaCAGCGaUGGCgGGUccGGCGg -3' miRNA: 3'- -CCCugGC-GUCGC-ACCGgCCGcaCCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 138223 | 0.67 | 0.592704 |
Target: 5'- gGGGugUGUAGCuUGuaCGGCGUuuugucGGCGg -3' miRNA: 3'- -CCCugGCGUCGcACcgGCCGCA------CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 138815 | 0.67 | 0.602036 |
Target: 5'- -aGACCGCAGUgGUGGCCacgGUGGUGu -3' miRNA: 3'- ccCUGGCGUCG-CACCGGccgCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 1843 | 0.66 | 0.676875 |
Target: 5'- cGGcGCCGCAccccGCGUcgcugcugacGGCCGuGCGUcGGCa -3' miRNA: 3'- -CCcUGGCGU----CGCA----------CCGGC-CGCA-CCGc -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 178067 | 0.66 | 0.66756 |
Target: 5'- gGGGACUGauccaGGCGUcGGCguugGGCaagGUGGCGc -3' miRNA: 3'- -CCCUGGCg----UCGCA-CCGg---CCG---CACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 191638 | 0.66 | 0.674083 |
Target: 5'- -aGGCCGUcagguGCGaGGCCgaacggugaaucuuGGCGUGGCGc -3' miRNA: 3'- ccCUGGCGu----CGCaCCGG--------------CCGCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 2094 | 0.66 | 0.676875 |
Target: 5'- --aGCCGUacGGCGccGCCGGCGggGGCGc -3' miRNA: 3'- cccUGGCG--UCGCacCGGCCGCa-CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 136086 | 0.66 | 0.658221 |
Target: 5'- cGGGcCCGCGGac-GGaCCGGCGccgGGCc -3' miRNA: 3'- -CCCuGGCGUCgcaCC-GGCCGCa--CCGc -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 155314 | 0.66 | 0.648864 |
Target: 5'- cGGGGCCG-GGC-UGGUCGGgggaagaaaCGUGGUGu -3' miRNA: 3'- -CCCUGGCgUCGcACCGGCC---------GCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 7803 | 0.66 | 0.648864 |
Target: 5'- uGGGuACCGUcacuagugacguGGCGUGacgaaGCUGGUacgGUGGCGg -3' miRNA: 3'- -CCC-UGGCG------------UCGCAC-----CGGCCG---CACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 182169 | 0.66 | 0.685233 |
Target: 5'- cGGGuCCcuggaAGCGUgugugGGCCGGCccucggggugcggGUGGCGg -3' miRNA: 3'- -CCCuGGcg---UCGCA-----CCGGCCG-------------CACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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