miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 5' -64.1 NC_001347.2 + 180271 0.73 0.301585
Target:  5'- -cGACCGCAGCgGUGGCUGgagaagcgcaGCGUcGGCGa -3'
miRNA:   3'- ccCUGGCGUCG-CACCGGC----------CGCA-CCGC- -5'
1554 5' -64.1 NC_001347.2 + 181741 0.67 0.611388
Target:  5'- -cGACCGCuGCGUGcGCCgacGGCGUuucaaGGUGu -3'
miRNA:   3'- ccCUGGCGuCGCAC-CGG---CCGCA-----CCGC- -5'
1554 5' -64.1 NC_001347.2 + 182169 0.66 0.685233
Target:  5'- cGGGuCCcuggaAGCGUgugugGGCCGGCccucggggugcggGUGGCGg -3'
miRNA:   3'- -CCCuGGcg---UCGCA-----CCGGCCG-------------CACCGC- -5'
1554 5' -64.1 NC_001347.2 + 184942 0.71 0.378149
Target:  5'- -cGuCUGCAGCucGUcGGCCGGCGUgGGCGg -3'
miRNA:   3'- ccCuGGCGUCG--CA-CCGGCCGCA-CCGC- -5'
1554 5' -64.1 NC_001347.2 + 187347 0.7 0.42508
Target:  5'- aGGugCGUuGCGUGGCCGuggcGCGUcGCGg -3'
miRNA:   3'- cCCugGCGuCGCACCGGC----CGCAcCGC- -5'
1554 5' -64.1 NC_001347.2 + 190143 0.68 0.574117
Target:  5'- cGGGGCCGCAaccGgGUucuGCCGGCaUGGgGg -3'
miRNA:   3'- -CCCUGGCGU---CgCAc--CGGCCGcACCgC- -5'
1554 5' -64.1 NC_001347.2 + 191638 0.66 0.674083
Target:  5'- -aGGCCGUcagguGCGaGGCCgaacggugaaucuuGGCGUGGCGc -3'
miRNA:   3'- ccCUGGCGu----CGCaCCGG--------------CCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 192193 0.7 0.436521
Target:  5'- -cGGCCGCGGCGcgGGCuCGGCGUcccgccguccgagacGGUGu -3'
miRNA:   3'- ccCUGGCGUCGCa-CCG-GCCGCA---------------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 195291 0.71 0.378149
Target:  5'- cGGGCCGUAGCGU-GCUGgauaGCGUGaGCGg -3'
miRNA:   3'- cCCUGGCGUCGCAcCGGC----CGCAC-CGC- -5'
1554 5' -64.1 NC_001347.2 + 197542 1.1 0.000856
Target:  5'- uGGGACCGCAGCGUGGCCGGCGUGGCGg -3'
miRNA:   3'- -CCCUGGCGUCGCACCGGCCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 229531 0.68 0.546507
Target:  5'- cGGGG-CGCGGCG-GGUgGGUGUGuGCc -3'
miRNA:   3'- -CCCUgGCGUCGCaCCGgCCGCAC-CGc -5'
1554 5' -64.1 NC_001347.2 + 229648 0.69 0.510393
Target:  5'- cGGGugUGUcgcgGGCGUGuggcggguguGCCGGCGggguguggUGGCGg -3'
miRNA:   3'- -CCCugGCG----UCGCAC----------CGGCCGC--------ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.