miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 5' -64.1 NC_001347.2 + 141806 0.71 0.385726
Target:  5'- -aGACCGCAgGCGU-GCCGGCGcccaUGGCc -3'
miRNA:   3'- ccCUGGCGU-CGCAcCGGCCGC----ACCGc -5'
1554 5' -64.1 NC_001347.2 + 140575 0.74 0.248277
Target:  5'- cGGGCgGCGGUGcUGGCgGGgGUGGUGg -3'
miRNA:   3'- cCCUGgCGUCGC-ACCGgCCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 140198 0.7 0.441479
Target:  5'- uGGGCCGCAGCauuUGGCguUGGUguGUGGCa -3'
miRNA:   3'- cCCUGGCGUCGc--ACCG--GCCG--CACCGc -5'
1554 5' -64.1 NC_001347.2 + 138815 0.67 0.602036
Target:  5'- -aGACCGCAGUgGUGGCCacgGUGGUGu -3'
miRNA:   3'- ccCUGGCGUCG-CACCGGccgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 138223 0.67 0.592704
Target:  5'- gGGGugUGUAGCuUGuaCGGCGUuuugucGGCGg -3'
miRNA:   3'- -CCCugGCGUCGcACcgGCCGCA------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 136171 0.68 0.542856
Target:  5'- cGGACCGCAGCacGGCCGgaacccugccGCGgacugcgccggggGGCGg -3'
miRNA:   3'- cCCUGGCGUCGcaCCGGC----------CGCa------------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 136086 0.66 0.658221
Target:  5'- cGGGcCCGCGGac-GGaCCGGCGccgGGCc -3'
miRNA:   3'- -CCCuGGCGUCgcaCC-GGCCGCa--CCGc -5'
1554 5' -64.1 NC_001347.2 + 117898 0.68 0.583395
Target:  5'- cGGGGCgGCGGCG-GGuCCcGUGaUGGCa -3'
miRNA:   3'- -CCCUGgCGUCGCaCC-GGcCGC-ACCGc -5'
1554 5' -64.1 NC_001347.2 + 113173 0.73 0.314569
Target:  5'- aGGGAaCGC-GCGccccagccGCCGGCGUGGCGg -3'
miRNA:   3'- -CCCUgGCGuCGCac------CGGCCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 110353 0.76 0.200256
Target:  5'- aGGGCCGCuGCGUGGUgGGCGaacaggaccgacugcUGGUGg -3'
miRNA:   3'- cCCUGGCGuCGCACCGgCCGC---------------ACCGC- -5'
1554 5' -64.1 NC_001347.2 + 104337 0.68 0.582466
Target:  5'- uGGACCGCuggauccGGCacgcGGCCGGCGUagaacGGCc -3'
miRNA:   3'- cCCUGGCG-------UCGca--CCGGCCGCA-----CCGc -5'
1554 5' -64.1 NC_001347.2 + 95469 0.67 0.620752
Target:  5'- uGGGCgCGCGucacGCG-GcGCCGGUGUcGGCGg -3'
miRNA:   3'- cCCUG-GCGU----CGCaC-CGGCCGCA-CCGC- -5'
1554 5' -64.1 NC_001347.2 + 89527 0.7 0.466731
Target:  5'- aGGugCGCGaCGaGGCCGGCcaGGCGg -3'
miRNA:   3'- cCCugGCGUcGCaCCGGCCGcaCCGC- -5'
1554 5' -64.1 NC_001347.2 + 78356 0.71 0.40905
Target:  5'- cGGACC-CGGCGUGGUgGGacccggcggcgcCGUGGUGg -3'
miRNA:   3'- cCCUGGcGUCGCACCGgCC------------GCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 77863 0.67 0.611388
Target:  5'- --uGCUGCAG-GUGGCCGaGCGccugGGCGc -3'
miRNA:   3'- cccUGGCGUCgCACCGGC-CGCa---CCGC- -5'
1554 5' -64.1 NC_001347.2 + 77318 0.68 0.537395
Target:  5'- uGGGCCGCGGCGUGGauGaCGaGGCc -3'
miRNA:   3'- cCCUGGCGUCGCACCggCcGCaCCGc -5'
1554 5' -64.1 NC_001347.2 + 75406 0.69 0.510393
Target:  5'- cGGGAgCgGCGGcCGUGG-CGGCGgcagcGGCGc -3'
miRNA:   3'- -CCCU-GgCGUC-GCACCgGCCGCa----CCGC- -5'
1554 5' -64.1 NC_001347.2 + 44036 0.7 0.449811
Target:  5'- uGGcGACgGCAGCGguggUGGCgcugGGgGUGGCGg -3'
miRNA:   3'- -CC-CUGgCGUCGC----ACCGg---CCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 40394 0.7 0.433234
Target:  5'- --cGCCGguGCGgGGCC-GCGUGGUGg -3'
miRNA:   3'- cccUGGCguCGCaCCGGcCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 40121 0.68 0.555667
Target:  5'- gGGGACCGCGGgGgaaauaacGGCC-GCGaGGCc -3'
miRNA:   3'- -CCCUGGCGUCgCa-------CCGGcCGCaCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.