miRNA display CGI


Results 41 - 52 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 5' -64.1 NC_001347.2 + 142581 0.69 0.519334
Target:  5'- cGGGA--GCAGCGgGGgCGGCGggGGCa -3'
miRNA:   3'- -CCCUggCGUCGCaCCgGCCGCa-CCGc -5'
1554 5' -64.1 NC_001347.2 + 229531 0.68 0.546507
Target:  5'- cGGGG-CGCGGCG-GGUgGGUGUGuGCc -3'
miRNA:   3'- -CCCUgGCGUCGCaCCGgCCGCAC-CGc -5'
1554 5' -64.1 NC_001347.2 + 136171 0.68 0.542856
Target:  5'- cGGACCGCAGCacGGCCGgaacccugccGCGgacugcgccggggGGCGg -3'
miRNA:   3'- cCCUGGCGUCGcaCCGGC----------CGCa------------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 40121 0.68 0.555667
Target:  5'- gGGGACCGCGGgGgaaauaacGGCC-GCGaGGCc -3'
miRNA:   3'- -CCCUGGCGUCgCa-------CCGGcCGCaCCGc -5'
1554 5' -64.1 NC_001347.2 + 173520 0.68 0.555667
Target:  5'- cGGGaacaGCgGCAagucGCGUGGCggCGGCgGUGGUGg -3'
miRNA:   3'- -CCC----UGgCGU----CGCACCG--GCCG-CACCGC- -5'
1554 5' -64.1 NC_001347.2 + 13923 0.68 0.559344
Target:  5'- gGGGcgucggagaguauaaACUGgGGCG-GGCgCGGgGUGGCGa -3'
miRNA:   3'- -CCC---------------UGGCgUCGCaCCG-GCCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 104337 0.68 0.582466
Target:  5'- uGGACCGCuggauccGGCacgcGGCCGGCGUagaacGGCc -3'
miRNA:   3'- cCCUGGCG-------UCGca--CCGGCCGCA-----CCGc -5'
1554 5' -64.1 NC_001347.2 + 190143 0.68 0.574117
Target:  5'- cGGGGCCGCAaccGgGUucuGCCGGCaUGGgGg -3'
miRNA:   3'- -CCCUGGCGU---CgCAc--CGGCCGcACCgC- -5'
1554 5' -64.1 NC_001347.2 + 138815 0.67 0.602036
Target:  5'- -aGACCGCAGUgGUGGCCacgGUGGUGu -3'
miRNA:   3'- ccCUGGCGUCG-CACCGGccgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 138223 0.67 0.592704
Target:  5'- gGGGugUGUAGCuUGuaCGGCGUuuugucGGCGg -3'
miRNA:   3'- -CCCugGCGUCGcACcgGCCGCA------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 117898 0.68 0.583395
Target:  5'- cGGGGCgGCGGCG-GGuCCcGUGaUGGCa -3'
miRNA:   3'- -CCCUGgCGUCGCaCC-GGcCGC-ACCGc -5'
1554 5' -64.1 NC_001347.2 + 182169 0.66 0.685233
Target:  5'- cGGGuCCcuggaAGCGUgugugGGCCGGCccucggggugcggGUGGCGg -3'
miRNA:   3'- -CCCuGGcg---UCGCA-----CCGGCCG-------------CACCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.