Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1555 | 3' | -52.9 | NC_001347.2 | + | 183472 | 0.69 | 0.967659 |
Target: 5'- --cGCGCC----UCGGCCUCGgGAGa -3' miRNA: 3'- acaUGCGGcaaaAGCCGGAGUgCUCc -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 172157 | 0.69 | 0.967659 |
Target: 5'- cGUgACGCCGUcagugUgGGCUUCGCGcGGc -3' miRNA: 3'- aCA-UGCGGCAaa---AgCCGGAGUGCuCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 39344 | 0.69 | 0.967659 |
Target: 5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3' miRNA: 3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 128236 | 0.69 | 0.964523 |
Target: 5'- --gACGCCG----CGGUCUCACcGAGGu -3' miRNA: 3'- acaUGCGGCaaaaGCCGGAGUG-CUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 94805 | 0.69 | 0.957626 |
Target: 5'- cGUaACGCCGg---CGuGCgUCAUGAGGu -3' miRNA: 3'- aCA-UGCGGCaaaaGC-CGgAGUGCUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 222151 | 0.7 | 0.945648 |
Target: 5'- gGUGCGCCGcgUcUUGGCCUgCAUGAu- -3' miRNA: 3'- aCAUGCGGCa-AaAGCCGGA-GUGCUcc -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 170611 | 0.7 | 0.936538 |
Target: 5'- gGUGCGCCGUUUugugCuGCgUCACaugGAGGa -3' miRNA: 3'- aCAUGCGGCAAAa---GcCGgAGUG---CUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 199628 | 0.71 | 0.909736 |
Target: 5'- --gGCGCCGUUcUCGGgCa-GCGAGGg -3' miRNA: 3'- acaUGCGGCAAaAGCCgGagUGCUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 18552 | 0.72 | 0.897413 |
Target: 5'- gGUACGUCG---UCGGCCUCGUGGGc -3' miRNA: 3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 74179 | 0.72 | 0.877266 |
Target: 5'- gGUACcacCCGUcgacugUCaGCCUCGCGAGGa -3' miRNA: 3'- aCAUGc--GGCAaa----AGcCGGAGUGCUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 157148 | 0.74 | 0.814674 |
Target: 5'- -cUGCGCCGUcucUUCGcGCCccucugcguUCACGAGGa -3' miRNA: 3'- acAUGCGGCAa--AAGC-CGG---------AGUGCUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 156823 | 0.75 | 0.723607 |
Target: 5'- --gACGUCGgaggguccgcgcgUCGGCCUCugGAGGa -3' miRNA: 3'- acaUGCGGCaaa----------AGCCGGAGugCUCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 112432 | 0.77 | 0.633111 |
Target: 5'- cGUGCccgGCCGUgcUCGGCCUCGCcuGGGa -3' miRNA: 3'- aCAUG---CGGCAaaAGCCGGAGUGc-UCC- -5' |
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1555 | 3' | -52.9 | NC_001347.2 | + | 197212 | 1.11 | 0.007692 |
Target: 5'- aUGUACGCCGUUUUCGGCCUCACGAGGu -3' miRNA: 3'- -ACAUGCGGCAAAAGCCGGAGUGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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