Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1555 | 5' | -61.4 | NC_001347.2 | + | 75396 | 0.67 | 0.727872 |
Target: 5'- cCGCUccaaGCggGAgcggcGGCCGUGGCGGCgGCa- -3' miRNA: 3'- -GCGG----UGuaCU-----UCGGCGCCGCCG-CGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 71645 | 0.67 | 0.727872 |
Target: 5'- cCGCUACGcauccguGGCCGCGGCcGGCGg-- -3' miRNA: 3'- -GCGGUGUacu----UCGGCGCCG-CCGCgca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 171910 | 0.67 | 0.727872 |
Target: 5'- aG-CACAUGuacuuuGCCGCGGUGcGCGCu- -3' miRNA: 3'- gCgGUGUACuu----CGGCGCCGC-CGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 66505 | 0.68 | 0.632756 |
Target: 5'- aCGCCGCGaucGAGGCgGCGGCGauCGCa- -3' miRNA: 3'- -GCGGUGUa--CUUCGgCGCCGCc-GCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 167863 | 0.68 | 0.652007 |
Target: 5'- uGCUaaugaugggaaACAUGAGGCCGCuGGCGucacGCGCu- -3' miRNA: 3'- gCGG-----------UGUACUUCGGCG-CCGC----CGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 153307 | 0.68 | 0.642385 |
Target: 5'- aCGCCACuuugcUGGccAGCuCGCguuGGCGGCGCu- -3' miRNA: 3'- -GCGGUGu----ACU--UCG-GCG---CCGCCGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 193992 | 0.68 | 0.632756 |
Target: 5'- gGCgCugGUGggGCaggauaaguuggUGCGGCuGGCGCGc -3' miRNA: 3'- gCG-GugUACuuCG------------GCGCCG-CCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 2010 | 0.68 | 0.632756 |
Target: 5'- gCGgCACGgagacgGAGGCCGcCGGCGGggaCGCGc -3' miRNA: 3'- -GCgGUGUa-----CUUCGGC-GCCGCC---GCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 101250 | 0.68 | 0.652007 |
Target: 5'- uGCCGCGUGuGGCCaGCGGCGcCG-GUu -3' miRNA: 3'- gCGGUGUACuUCGG-CGCCGCcGCgCA- -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 127580 | 0.68 | 0.652007 |
Target: 5'- uGCC-CGUGGA--CGCGGcCGGCGCGc -3' miRNA: 3'- gCGGuGUACUUcgGCGCC-GCCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 158718 | 0.68 | 0.661614 |
Target: 5'- gGCCACAuugUGcagcAGGCgCGCGGCGGUuuagcaGCGg -3' miRNA: 3'- gCGGUGU---AC----UUCG-GCGCCGCCG------CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 168792 | 0.68 | 0.661614 |
Target: 5'- uCGCCAuCAUGGAcgcGCgCGCGGUGGCcaaacggccgcGCGa -3' miRNA: 3'- -GCGGU-GUACUU---CG-GCGCCGCCG-----------CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 198113 | 0.68 | 0.671201 |
Target: 5'- uCGUCGCGuUGAGGauagucgCGCGGUGGCaGCGg -3' miRNA: 3'- -GCGGUGU-ACUUCg------GCGCCGCCG-CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 53739 | 0.68 | 0.68076 |
Target: 5'- aGCCGCGU---GCCGCGG-GuGCGCGc -3' miRNA: 3'- gCGGUGUAcuuCGGCGCCgC-CGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 67024 | 0.68 | 0.68076 |
Target: 5'- gGCUGCG-GAgacAGCUGCGGCGGUccucGCGa -3' miRNA: 3'- gCGGUGUaCU---UCGGCGCCGCCG----CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 128445 | 0.69 | 0.623127 |
Target: 5'- uGCUGCGUG--GCCGUcaaGCGGCGCGa -3' miRNA: 3'- gCGGUGUACuuCGGCGc--CGCCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 59122 | 0.69 | 0.613503 |
Target: 5'- gGCCAUca-GAGCaGCGGCGGgGCGa -3' miRNA: 3'- gCGGUGuacUUCGgCGCCGCCgCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 197556 | 0.69 | 0.613503 |
Target: 5'- gGCCgGCGUGGcGGCCGaCGGCaGCGUGc -3' miRNA: 3'- gCGG-UGUACU-UCGGC-GCCGcCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 95409 | 0.69 | 0.623127 |
Target: 5'- cCGCCAgcaacgaguuCAUGGcGGCUGUGGCGGguCGCGa -3' miRNA: 3'- -GCGGU----------GUACU-UCGGCGCCGCC--GCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 170151 | 0.69 | 0.603892 |
Target: 5'- cCGCC--GUGcccAGUCGCGGUGGaCGCGUg -3' miRNA: 3'- -GCGGugUACu--UCGGCGCCGCC-GCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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