miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 111986 0.69 0.603892
Target:  5'- gGCuCugG-GAAGCUGCGGCGGCuugggcagcaGCGg -3'
miRNA:   3'- gCG-GugUaCUUCGGCGCCGCCG----------CGCa -5'
1555 5' -61.4 NC_001347.2 + 694 0.69 0.603892
Target:  5'- gGCCuuccagacuGCGUGgcGCCaaGGCGGCGCc- -3'
miRNA:   3'- gCGG---------UGUACuuCGGcgCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 170151 0.69 0.603892
Target:  5'- cCGCC--GUGcccAGUCGCGGUGGaCGCGUg -3'
miRNA:   3'- -GCGGugUACu--UCGGCGCCGCC-GCGCA- -5'
1555 5' -61.4 NC_001347.2 + 128445 0.69 0.623127
Target:  5'- uGCUGCGUG--GCCGUcaaGCGGCGCGa -3'
miRNA:   3'- gCGGUGUACuuCGGCGc--CGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 59122 0.69 0.613503
Target:  5'- gGCCAUca-GAGCaGCGGCGGgGCGa -3'
miRNA:   3'- gCGGUGuacUUCGgCGCCGCCgCGCa -5'
1555 5' -61.4 NC_001347.2 + 197556 0.69 0.613503
Target:  5'- gGCCgGCGUGGcGGCCGaCGGCaGCGUGc -3'
miRNA:   3'- gCGG-UGUACU-UCGGC-GCCGcCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 95409 0.69 0.623127
Target:  5'- cCGCCAgcaacgaguuCAUGGcGGCUGUGGCGGguCGCGa -3'
miRNA:   3'- -GCGGU----------GUACU-UCGGCGCCGCC--GCGCa -5'
1555 5' -61.4 NC_001347.2 + 41156 0.69 0.623127
Target:  5'- -cCCGCGcgGAAauccGCCGCGGCGGUgGCGa -3'
miRNA:   3'- gcGGUGUa-CUU----CGGCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 153850 0.7 0.528149
Target:  5'- gCGCCACGUccucguguGCCGCGccgaGCGGCGaCGUg -3'
miRNA:   3'- -GCGGUGUAcuu-----CGGCGC----CGCCGC-GCA- -5'
1555 5' -61.4 NC_001347.2 + 173651 0.7 0.528149
Target:  5'- gCGUCugGgagGAGGUgGCGGCGGUgGCGg -3'
miRNA:   3'- -GCGGugUa--CUUCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 38414 0.7 0.518902
Target:  5'- uGCCGCuc---GCCGCuGGCGGCGaCGUc -3'
miRNA:   3'- gCGGUGuacuuCGGCG-CCGCCGC-GCA- -5'
1555 5' -61.4 NC_001347.2 + 16852 0.7 0.516141
Target:  5'- aCGCaACG-GAGGCUGCguacacaugggcgaGGCGGCGCGUc -3'
miRNA:   3'- -GCGgUGUaCUUCGGCG--------------CCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 139661 0.7 0.546819
Target:  5'- aGCCGCGUGu-GCUGaucgaGGCGGCGUu- -3'
miRNA:   3'- gCGGUGUACuuCGGCg----CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 82578 0.7 0.537456
Target:  5'- cCGCgCACcacgaacguGUGAAGCCGCGGCucGGCaCGg -3'
miRNA:   3'- -GCG-GUG---------UACUUCGGCGCCG--CCGcGCa -5'
1555 5' -61.4 NC_001347.2 + 228722 0.7 0.555289
Target:  5'- uCGCCACc----GCCGCGGCGgauuuccGCGCGg -3'
miRNA:   3'- -GCGGUGuacuuCGGCGCCGC-------CGCGCa -5'
1555 5' -61.4 NC_001347.2 + 156620 0.7 0.565693
Target:  5'- -cCCAcCAUGGucGCCGCuGGCGGCGCc- -3'
miRNA:   3'- gcGGU-GUACUu-CGGCG-CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 38010 0.7 0.565693
Target:  5'- cCGCCGCGc--GGCCuCGGCGGCGgGc -3'
miRNA:   3'- -GCGGUGUacuUCGGcGCCGCCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 165547 0.7 0.565693
Target:  5'- gGCCGCGaGAgcgcgugcacgguccGGCCGaaccgcgacuccaGGCGGCGCGg -3'
miRNA:   3'- gCGGUGUaCU---------------UCGGCg------------CCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 79049 0.71 0.50972
Target:  5'- aGCCGCGaGAAGgCGCGuCGGCGCc- -3'
miRNA:   3'- gCGGUGUaCUUCgGCGCcGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 192021 0.71 0.500607
Target:  5'- aGCUcCGUGAAGCUGaCGaGCGGCaGCGg -3'
miRNA:   3'- gCGGuGUACUUCGGC-GC-CGCCG-CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.