Results 101 - 105 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1555 | 5' | -61.4 | NC_001347.2 | + | 117427 | 0.66 | 0.746258 |
Target: 5'- uCGCCAC--GGAGUC-CGGCGGauCGCGg -3' miRNA: 3'- -GCGGUGuaCUUCGGcGCCGCC--GCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 78661 | 0.66 | 0.746258 |
Target: 5'- uGCC-CGUguugGAGGCCGUGcGCaaGGCGCGc -3' miRNA: 3'- gCGGuGUA----CUUCGGCGC-CG--CCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 19105 | 0.66 | 0.749895 |
Target: 5'- cCGCC-CAUGu-GCCGCGuuccguacaacgaauGCGGCGuCGa -3' miRNA: 3'- -GCGGuGUACuuCGGCGC---------------CGCCGC-GCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 25353 | 0.66 | 0.755322 |
Target: 5'- uGCCGCGUGgcGCUGCacaccuauGGCGcCGUGg -3' miRNA: 3'- gCGGUGUACuuCGGCG--------CCGCcGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 108201 | 0.66 | 0.755322 |
Target: 5'- gCGCaggcaGCAUGGAGUCGCG-CGGuCGCc- -3' miRNA: 3'- -GCGg----UGUACUUCGGCGCcGCC-GCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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