miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 107139 0.69 0.593342
Target:  5'- gGCCGCGUGGacucaccAGCCGUaucuCGGCGCGc -3'
miRNA:   3'- gCGGUGUACU-------UCGGCGcc--GCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 92246 0.69 0.5943
Target:  5'- cCGCCuGCccGcAGGCCGUGGCcgccgccaugaGGCGCGUc -3'
miRNA:   3'- -GCGG-UGuaC-UUCGGCGCCG-----------CCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 694 0.69 0.603892
Target:  5'- gGCCuuccagacuGCGUGgcGCCaaGGCGGCGCc- -3'
miRNA:   3'- gCGG---------UGUACuuCGGcgCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 111986 0.69 0.603892
Target:  5'- gGCuCugG-GAAGCUGCGGCGGCuugggcagcaGCGg -3'
miRNA:   3'- gCG-GugUaCUUCGGCGCCGCCG----------CGCa -5'
1555 5' -61.4 NC_001347.2 + 170151 0.69 0.603892
Target:  5'- cCGCC--GUGcccAGUCGCGGUGGaCGCGUg -3'
miRNA:   3'- -GCGGugUACu--UCGGCGCCGCC-GCGCA- -5'
1555 5' -61.4 NC_001347.2 + 197556 0.69 0.613503
Target:  5'- gGCCgGCGUGGcGGCCGaCGGCaGCGUGc -3'
miRNA:   3'- gCGG-UGUACU-UCGGC-GCCGcCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 59122 0.69 0.613503
Target:  5'- gGCCAUca-GAGCaGCGGCGGgGCGa -3'
miRNA:   3'- gCGGUGuacUUCGgCGCCGCCgCGCa -5'
1555 5' -61.4 NC_001347.2 + 128445 0.69 0.623127
Target:  5'- uGCUGCGUG--GCCGUcaaGCGGCGCGa -3'
miRNA:   3'- gCGGUGUACuuCGGCGc--CGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 95409 0.69 0.623127
Target:  5'- cCGCCAgcaacgaguuCAUGGcGGCUGUGGCGGguCGCGa -3'
miRNA:   3'- -GCGGU----------GUACU-UCGGCGCCGCC--GCGCa -5'
1555 5' -61.4 NC_001347.2 + 41156 0.69 0.623127
Target:  5'- -cCCGCGcgGAAauccGCCGCGGCGGUgGCGa -3'
miRNA:   3'- gcGGUGUa-CUU----CGGCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 2010 0.68 0.632756
Target:  5'- gCGgCACGgagacgGAGGCCGcCGGCGGggaCGCGc -3'
miRNA:   3'- -GCgGUGUa-----CUUCGGC-GCCGCC---GCGCa -5'
1555 5' -61.4 NC_001347.2 + 193992 0.68 0.632756
Target:  5'- gGCgCugGUGggGCaggauaaguuggUGCGGCuGGCGCGc -3'
miRNA:   3'- gCG-GugUACuuCG------------GCGCCG-CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 66505 0.68 0.632756
Target:  5'- aCGCCGCGaucGAGGCgGCGGCGauCGCa- -3'
miRNA:   3'- -GCGGUGUa--CUUCGgCGCCGCc-GCGca -5'
1555 5' -61.4 NC_001347.2 + 153307 0.68 0.642385
Target:  5'- aCGCCACuuugcUGGccAGCuCGCguuGGCGGCGCu- -3'
miRNA:   3'- -GCGGUGu----ACU--UCG-GCG---CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 167863 0.68 0.652007
Target:  5'- uGCUaaugaugggaaACAUGAGGCCGCuGGCGucacGCGCu- -3'
miRNA:   3'- gCGG-----------UGUACUUCGGCG-CCGC----CGCGca -5'
1555 5' -61.4 NC_001347.2 + 101250 0.68 0.652007
Target:  5'- uGCCGCGUGuGGCCaGCGGCGcCG-GUu -3'
miRNA:   3'- gCGGUGUACuUCGG-CGCCGCcGCgCA- -5'
1555 5' -61.4 NC_001347.2 + 127580 0.68 0.652007
Target:  5'- uGCC-CGUGGA--CGCGGcCGGCGCGc -3'
miRNA:   3'- gCGGuGUACUUcgGCGCC-GCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 158718 0.68 0.661614
Target:  5'- gGCCACAuugUGcagcAGGCgCGCGGCGGUuuagcaGCGg -3'
miRNA:   3'- gCGGUGU---AC----UUCG-GCGCCGCCG------CGCa -5'
1555 5' -61.4 NC_001347.2 + 168792 0.68 0.661614
Target:  5'- uCGCCAuCAUGGAcgcGCgCGCGGUGGCcaaacggccgcGCGa -3'
miRNA:   3'- -GCGGU-GUACUU---CG-GCGCCGCCG-----------CGCa -5'
1555 5' -61.4 NC_001347.2 + 198113 0.68 0.671201
Target:  5'- uCGUCGCGuUGAGGauagucgCGCGGUGGCaGCGg -3'
miRNA:   3'- -GCGGUGU-ACUUCg------GCGCCGCCG-CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.