miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 82578 0.7 0.537456
Target:  5'- cCGCgCACcacgaacguGUGAAGCCGCGGCucGGCaCGg -3'
miRNA:   3'- -GCG-GUG---------UACUUCGGCGCCG--CCGcGCa -5'
1555 5' -61.4 NC_001347.2 + 84617 0.66 0.746258
Target:  5'- aGCCGuCGUGGguGGCCucGCGGUGGCuGCc- -3'
miRNA:   3'- gCGGU-GUACU--UCGG--CGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 85990 0.71 0.473718
Target:  5'- cCGCCACccGAAccguccGCCGCcGCGGCGCc- -3'
miRNA:   3'- -GCGGUGuaCUU------CGGCGcCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 86263 0.71 0.50972
Target:  5'- uCGgCGCGcGAAGCUuCGGCGGCGUGc -3'
miRNA:   3'- -GCgGUGUaCUUCGGcGCCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 87006 0.67 0.737105
Target:  5'- gCGCgGCA---GGCCGCGcCGGCGUGc -3'
miRNA:   3'- -GCGgUGUacuUCGGCGCcGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 88308 0.67 0.699763
Target:  5'- aCGaCCACAUGGccgaAGUuuCGCGGCaGCGCa- -3'
miRNA:   3'- -GC-GGUGUACU----UCG--GCGCCGcCGCGca -5'
1555 5' -61.4 NC_001347.2 + 88597 0.67 0.699763
Target:  5'- aGCCugGgcgaccuGAGCgGCGGCGGCcugcGCGg -3'
miRNA:   3'- gCGGugUac-----UUCGgCGCCGCCG----CGCa -5'
1555 5' -61.4 NC_001347.2 + 92246 0.69 0.5943
Target:  5'- cCGCCuGCccGcAGGCCGUGGCcgccgccaugaGGCGCGUc -3'
miRNA:   3'- -GCGG-UGuaC-UUCGGCGCCG-----------CCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 95409 0.69 0.623127
Target:  5'- cCGCCAgcaacgaguuCAUGGcGGCUGUGGCGGguCGCGa -3'
miRNA:   3'- -GCGGU----------GUACU-UCGGCGCCGCC--GCGCa -5'
1555 5' -61.4 NC_001347.2 + 98032 0.69 0.575195
Target:  5'- aCGCUccuCcgGAcgaaacGCCGCGGCGGCaGCGg -3'
miRNA:   3'- -GCGGu--GuaCUu-----CGGCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 99125 0.74 0.31633
Target:  5'- gGUCAUGUucuuggGAAGCCGCGGCG-CGCGUa -3'
miRNA:   3'- gCGGUGUA------CUUCGGCGCCGCcGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 100864 0.71 0.482603
Target:  5'- gCGUCAC----AGCCGaGGCGGCGCGg -3'
miRNA:   3'- -GCGGUGuacuUCGGCgCCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 101165 0.77 0.226466
Target:  5'- aGCgGCuu--GGCCGCGGCGGCGCa- -3'
miRNA:   3'- gCGgUGuacuUCGGCGCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 101250 0.68 0.652007
Target:  5'- uGCCGCGUGuGGCCaGCGGCGcCG-GUu -3'
miRNA:   3'- gCGGUGUACuUCGG-CGCCGCcGCgCA- -5'
1555 5' -61.4 NC_001347.2 + 105144 0.67 0.736185
Target:  5'- gCGCCACGcucgcucUGAcGCCGCGccCGGUGCa- -3'
miRNA:   3'- -GCGGUGU-------ACUuCGGCGCc-GCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 106229 0.75 0.277476
Target:  5'- aGCCAgAcGAGGCgGCGGCGGUgGCGUu -3'
miRNA:   3'- gCGGUgUaCUUCGgCGCCGCCG-CGCA- -5'
1555 5' -61.4 NC_001347.2 + 107139 0.69 0.593342
Target:  5'- gGCCGCGUGGacucaccAGCCGUaucuCGGCGCGc -3'
miRNA:   3'- gCGGUGUACU-------UCGGCGcc--GCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 108201 0.66 0.755322
Target:  5'- gCGCaggcaGCAUGGAGUCGCG-CGGuCGCc- -3'
miRNA:   3'- -GCGg----UGUACUUCGGCGCcGCC-GCGca -5'
1555 5' -61.4 NC_001347.2 + 111986 0.69 0.603892
Target:  5'- gGCuCugG-GAAGCUGCGGCGGCuugggcagcaGCGg -3'
miRNA:   3'- gCG-GugUaCUUCGGCGCCGCCG----------CGCa -5'
1555 5' -61.4 NC_001347.2 + 112979 0.69 0.592384
Target:  5'- uGCCACGguagcaccuggaGGAGCCGUaGCGGCGgGa -3'
miRNA:   3'- gCGGUGUa-----------CUUCGGCGcCGCCGCgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.