miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 168792 0.68 0.661614
Target:  5'- uCGCCAuCAUGGAcgcGCgCGCGGUGGCcaaacggccgcGCGa -3'
miRNA:   3'- -GCGGU-GUACUU---CG-GCGCCGCCG-----------CGCa -5'
1555 5' -61.4 NC_001347.2 + 167863 0.68 0.652007
Target:  5'- uGCUaaugaugggaaACAUGAGGCCGCuGGCGucacGCGCu- -3'
miRNA:   3'- gCGG-----------UGUACUUCGGCG-CCGC----CGCGca -5'
1555 5' -61.4 NC_001347.2 + 166059 0.72 0.447574
Target:  5'- gCGUCAUgcGGAGUCGCGGCGGUugggGCGc -3'
miRNA:   3'- -GCGGUGuaCUUCGGCGCCGCCG----CGCa -5'
1555 5' -61.4 NC_001347.2 + 165547 0.7 0.565693
Target:  5'- gGCCGCGaGAgcgcgugcacgguccGGCCGaaccgcgacuccaGGCGGCGCGg -3'
miRNA:   3'- gCGGUGUaCU---------------UCGGCg------------CCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 159462 0.66 0.790539
Target:  5'- gGCCGCucgaugacgAUGucGgCGCGGCGGCuGCu- -3'
miRNA:   3'- gCGGUG---------UACuuCgGCGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 158718 0.68 0.661614
Target:  5'- gGCCACAuugUGcagcAGGCgCGCGGCGGUuuagcaGCGg -3'
miRNA:   3'- gCGGUGU---AC----UUCG-GCGCCGCCG------CGCa -5'
1555 5' -61.4 NC_001347.2 + 156668 0.72 0.42225
Target:  5'- cCGCCACccAUGGcggcgGGUCGUGGCGGCuGUGUc -3'
miRNA:   3'- -GCGGUG--UACU-----UCGGCGCCGCCG-CGCA- -5'
1555 5' -61.4 NC_001347.2 + 156620 0.7 0.565693
Target:  5'- -cCCAcCAUGGucGCCGCuGGCGGCGCc- -3'
miRNA:   3'- gcGGU-GUACUu-CGGCG-CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 153850 0.7 0.528149
Target:  5'- gCGCCACGUccucguguGCCGCGccgaGCGGCGaCGUg -3'
miRNA:   3'- -GCGGUGUAcuu-----CGGCGC----CGCCGC-GCA- -5'
1555 5' -61.4 NC_001347.2 + 153307 0.68 0.642385
Target:  5'- aCGCCACuuugcUGGccAGCuCGCguuGGCGGCGCu- -3'
miRNA:   3'- -GCGGUGu----ACU--UCG-GCG---CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 152990 0.66 0.790539
Target:  5'- gGCCAcCAUGgcGUCGgaGGCGGUGgGc -3'
miRNA:   3'- gCGGU-GUACuuCGGCg-CCGCCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 152224 0.67 0.737105
Target:  5'- --gCACAUGguGCUGCcGCGGCGCu- -3'
miRNA:   3'- gcgGUGUACuuCGGCGcCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 151338 0.72 0.414002
Target:  5'- aCGCCGCA---GGCUcUGGUGGCGCGUg -3'
miRNA:   3'- -GCGGUGUacuUCGGcGCCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 148602 0.66 0.781906
Target:  5'- gGCgGCGUGAccggcggugcGGUCGCGGgUGGCcgGCGUc -3'
miRNA:   3'- gCGgUGUACU----------UCGGCGCC-GCCG--CGCA- -5'
1555 5' -61.4 NC_001347.2 + 147897 0.79 0.175136
Target:  5'- aGCCAU-UGggGCCGUgGGUGGCGCGg -3'
miRNA:   3'- gCGGUGuACuuCGGCG-CCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 143718 0.67 0.727872
Target:  5'- uCGCC-UAUGcGGCaucuCGcCGGUGGCGCGUc -3'
miRNA:   3'- -GCGGuGUACuUCG----GC-GCCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 142981 0.71 0.500607
Target:  5'- uCGCCcgagGCGgaGGAGCCgGCGGCGGCG-GUg -3'
miRNA:   3'- -GCGG----UGUa-CUUCGG-CGCCGCCGCgCA- -5'
1555 5' -61.4 NC_001347.2 + 141823 0.69 0.584732
Target:  5'- gCGCC-CAUG--GCCGCcacuGUGGCGCGUg -3'
miRNA:   3'- -GCGGuGUACuuCGGCGc---CGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 139661 0.7 0.546819
Target:  5'- aGCCGCGUGu-GCUGaucgaGGCGGCGUu- -3'
miRNA:   3'- gCGGUGUACuuCGGCg----CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 137072 0.72 0.439038
Target:  5'- gGUCACGUG-AGaaGCGGCGGCGUu- -3'
miRNA:   3'- gCGGUGUACuUCggCGCCGCCGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.