miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 87006 0.67 0.737105
Target:  5'- gCGCgGCA---GGCCGCGcCGGCGUGc -3'
miRNA:   3'- -GCGgUGUacuUCGGCGCcGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 2094 0.67 0.737105
Target:  5'- aGCCGUAcGgcGCCGcCGGCgggGGCGCGa -3'
miRNA:   3'- gCGGUGUaCuuCGGC-GCCG---CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 152224 0.67 0.737105
Target:  5'- --gCACAUGguGCUGCcGCGGCGCu- -3'
miRNA:   3'- gcgGUGUACuuCGGCGcCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 105144 0.67 0.736185
Target:  5'- gCGCCACGcucgcucUGAcGCCGCGccCGGUGCa- -3'
miRNA:   3'- -GCGGUGU-------ACUuCGGCGCc-GCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 200165 0.67 0.734343
Target:  5'- uCGCCACGcu-GGCCGCGGUgaggacaagaagacGGaGCGUg -3'
miRNA:   3'- -GCGGUGUacuUCGGCGCCG--------------CCgCGCA- -5'
1555 5' -61.4 NC_001347.2 + 143718 0.67 0.727872
Target:  5'- uCGCC-UAUGcGGCaucuCGcCGGUGGCGCGUc -3'
miRNA:   3'- -GCGGuGUACuUCG----GC-GCCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 191980 0.67 0.727872
Target:  5'- cCGCCACc----GCaGCGGCGGCGaCGg -3'
miRNA:   3'- -GCGGUGuacuuCGgCGCCGCCGC-GCa -5'
1555 5' -61.4 NC_001347.2 + 75396 0.67 0.727872
Target:  5'- cCGCUccaaGCggGAgcggcGGCCGUGGCGGCgGCa- -3'
miRNA:   3'- -GCGG----UGuaCU-----UCGGCGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 71645 0.67 0.727872
Target:  5'- cCGCUACGcauccguGGCCGCGGCcGGCGg-- -3'
miRNA:   3'- -GCGGUGUacu----UCGGCGCCG-CCGCgca -5'
1555 5' -61.4 NC_001347.2 + 171910 0.67 0.727872
Target:  5'- aG-CACAUGuacuuuGCCGCGGUGcGCGCu- -3'
miRNA:   3'- gCgGUGUACuu----CGGCGCCGC-CGCGca -5'
1555 5' -61.4 NC_001347.2 + 66783 0.67 0.718565
Target:  5'- cCGCCcgACGgugGuGGCgGCGGCGGCaGUGg -3'
miRNA:   3'- -GCGG--UGUa--CuUCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 38243 0.67 0.712949
Target:  5'- gCGCCGCugcUGcuGCCGCGuccgccccgaccaccGCGuGCGCGUc -3'
miRNA:   3'- -GCGGUGu--ACuuCGGCGC---------------CGC-CGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 192975 0.67 0.709193
Target:  5'- gCGCCccgGCGUucAGUCGCGGCuGaGCGUGUg -3'
miRNA:   3'- -GCGG---UGUAcuUCGGCGCCG-C-CGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 184728 0.67 0.699763
Target:  5'- aGCCG-AUGAGGacguggcacaguUCGCGGUGGCGCu- -3'
miRNA:   3'- gCGGUgUACUUC------------GGCGCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 88597 0.67 0.699763
Target:  5'- aGCCugGgcgaccuGAGCgGCGGCGGCcugcGCGg -3'
miRNA:   3'- gCGGugUac-----UUCGgCGCCGCCG----CGCa -5'
1555 5' -61.4 NC_001347.2 + 88308 0.67 0.699763
Target:  5'- aCGaCCACAUGGccgaAGUuuCGCGGCaGCGCa- -3'
miRNA:   3'- -GC-GGUGUACU----UCG--GCGCCGcCGCGca -5'
1555 5' -61.4 NC_001347.2 + 47136 0.67 0.690283
Target:  5'- gGCgGCAau-GGCCGCGGCaGCGgGg -3'
miRNA:   3'- gCGgUGUacuUCGGCGCCGcCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 5780 0.67 0.690283
Target:  5'- cCGCCGCAucUGucGCCGCcaauuGGCGGCccucCGUu -3'
miRNA:   3'- -GCGGUGU--ACuuCGGCG-----CCGCCGc---GCA- -5'
1555 5' -61.4 NC_001347.2 + 173718 0.67 0.690283
Target:  5'- aCGCgGaaaAUGAgcAGCgGUGGCGGCgGCGg -3'
miRNA:   3'- -GCGgUg--UACU--UCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 192175 0.67 0.690283
Target:  5'- cCGCCGucuCcgGAugAGCgGCcGCGGCGCGg -3'
miRNA:   3'- -GCGGU---GuaCU--UCGgCGcCGCCGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.