miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1556 3' -49.4 NC_001347.2 + 180758 0.66 0.999432
Target:  5'- --gCGCGAcUGCGUCUACGAgCUGGc -3'
miRNA:   3'- aaaGCGUUuGUGCAGGUGCUaGACUu -5'
1556 3' -49.4 NC_001347.2 + 99998 0.66 0.999136
Target:  5'- --aCGCGGGCGCGgUCGCGAUgcagCUGAGc -3'
miRNA:   3'- aaaGCGUUUGUGCaGGUGCUA----GACUU- -5'
1556 3' -49.4 NC_001347.2 + 165549 0.66 0.998944
Target:  5'- --cCGCGAgaGCGCGUgCACGGUCcGGc -3'
miRNA:   3'- aaaGCGUU--UGUGCAgGUGCUAGaCUu -5'
1556 3' -49.4 NC_001347.2 + 82207 0.66 0.998944
Target:  5'- cUUCGgAGACGCGuUCCGCGGUaugcgUGAc -3'
miRNA:   3'- aAAGCgUUUGUGC-AGGUGCUAg----ACUu -5'
1556 3' -49.4 NC_001347.2 + 157926 0.66 0.998944
Target:  5'- gUUUUGCGAcACGUGUCCGCGAUacCUGGu -3'
miRNA:   3'- -AAAGCGUU-UGUGCAGGUGCUA--GACUu -5'
1556 3' -49.4 NC_001347.2 + 48861 0.67 0.998449
Target:  5'- gUUCGCGuGCACGcgCCAaaAUCUGAc -3'
miRNA:   3'- aAAGCGUuUGUGCa-GGUgcUAGACUu -5'
1556 3' -49.4 NC_001347.2 + 170163 0.68 0.994929
Target:  5'- -gUCGCGgugGACGCGUgaguaGCGGUCUGAGc -3'
miRNA:   3'- aaAGCGU---UUGUGCAgg---UGCUAGACUU- -5'
1556 3' -49.4 NC_001347.2 + 195790 0.69 0.989678
Target:  5'- ---gGCAAGUACGacaUCCGCGGUCUGAc -3'
miRNA:   3'- aaagCGUUUGUGC---AGGUGCUAGACUu -5'
1556 3' -49.4 NC_001347.2 + 130041 0.7 0.986656
Target:  5'- --aCGCGAcgACGUCUGCGAUCUGc- -3'
miRNA:   3'- aaaGCGUUugUGCAGGUGCUAGACuu -5'
1556 3' -49.4 NC_001347.2 + 138689 0.7 0.980905
Target:  5'- uUUUCGCGGGCggguGCGUCggcuaGCGGUCUGGu -3'
miRNA:   3'- -AAAGCGUUUG----UGCAGg----UGCUAGACUu -5'
1556 3' -49.4 NC_001347.2 + 194646 0.71 0.976153
Target:  5'- --aCGCAAACACGgcgCCcgaGAUCUGGGu -3'
miRNA:   3'- aaaGCGUUUGUGCa--GGug-CUAGACUU- -5'
1556 3' -49.4 NC_001347.2 + 155687 0.72 0.943903
Target:  5'- --gCGCc-GCGCGUCUACGAUCUGu- -3'
miRNA:   3'- aaaGCGuuUGUGCAGGUGCUAGACuu -5'
1556 3' -49.4 NC_001347.2 + 108679 0.74 0.904939
Target:  5'- -gUgGCAGGCGCGUCuCACGGUCUcGGGa -3'
miRNA:   3'- aaAgCGUUUGUGCAG-GUGCUAGA-CUU- -5'
1556 3' -49.4 NC_001347.2 + 196790 1.04 0.02955
Target:  5'- gUUUCGCAAACACGUCCACGAUCUGAAg -3'
miRNA:   3'- -AAAGCGUUUGUGCAGGUGCUAGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.