miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 125779 0.66 0.963564
Target:  5'- cGGCCACaGGCGc-GGCUuuGCGACGGCAc -3'
miRNA:   3'- -UUGGUG-CUGCcaUUGG--UGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 106917 0.66 0.963564
Target:  5'- cGCUACGACGuaaAGCCGCGcaucacACGGCGu -3'
miRNA:   3'- uUGGUGCUGCca-UUGGUGC------UGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 197249 0.66 0.963564
Target:  5'- cGCCAC-AUGa-AGCCGCGGCGGCGc -3'
miRNA:   3'- uUGGUGcUGCcaUUGGUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 112090 0.66 0.963564
Target:  5'- gAACC-CGacGCGGUAGCgA-GGCGGCAAc -3'
miRNA:   3'- -UUGGuGC--UGCCAUUGgUgCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 173665 0.66 0.961535
Target:  5'- -gUgGCGGCGGUggcggcaagaagcacGACCGCGgugGCGGCGGu -3'
miRNA:   3'- uuGgUGCUGCCA---------------UUGGUGC---UGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 82167 0.66 0.96014
Target:  5'- uAACCGCGACGcaauuuuuUGugCGCGugGGUg- -3'
miRNA:   3'- -UUGGUGCUGCc-------AUugGUGCugCCGuu -5'
1557 3' -55.4 NC_001347.2 + 90153 0.66 0.96014
Target:  5'- cACaaaGCGACGGcaaaggcuUAGCCGCGGCcGCGAa -3'
miRNA:   3'- uUGg--UGCUGCC--------AUUGGUGCUGcCGUU- -5'
1557 3' -55.4 NC_001347.2 + 139442 0.66 0.96014
Target:  5'- aGGCgACcACGGUgcGACugCACGGCGGCGAg -3'
miRNA:   3'- -UUGgUGcUGCCA--UUG--GUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 90600 0.66 0.96014
Target:  5'- aAACCcCGGCGGaccccggaGACC-UGACGGCAGu -3'
miRNA:   3'- -UUGGuGCUGCCa-------UUGGuGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 165407 0.66 0.96014
Target:  5'- aGACCACGGCGcgcGCCAacgaguUGACGGUGAc -3'
miRNA:   3'- -UUGGUGCUGCcauUGGU------GCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 87069 0.66 0.96014
Target:  5'- aGACCGCGcCGGUccaacAGCCGCaugaGGCAAa -3'
miRNA:   3'- -UUGGUGCuGCCA-----UUGGUGcug-CCGUU- -5'
1557 3' -55.4 NC_001347.2 + 7873 0.66 0.96014
Target:  5'- gGACggaaACGGCGGUaguGACCAgguggucagUGGCGGCGAc -3'
miRNA:   3'- -UUGg---UGCUGCCA---UUGGU---------GCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 78404 0.66 0.959785
Target:  5'- gGGCCACGuCGGgcugcuGCCGCcgccacccggcccGGCGGCGc -3'
miRNA:   3'- -UUGGUGCuGCCau----UGGUG-------------CUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 166407 0.66 0.952638
Target:  5'- gGGCCACcguGCGGUGACCcuugGCGuguCGGCu- -3'
miRNA:   3'- -UUGGUGc--UGCCAUUGG----UGCu--GCCGuu -5'
1557 3' -55.4 NC_001347.2 + 173541 0.66 0.948554
Target:  5'- uGGCgGCGGCGGUGG---UGGCGGCAGc -3'
miRNA:   3'- -UUGgUGCUGCCAUUgguGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 39924 0.66 0.944242
Target:  5'- gGACgGCGACuaguugcguguGGUgcggagGACgGCGACGGCGAa -3'
miRNA:   3'- -UUGgUGCUG-----------CCA------UUGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 62645 0.66 0.944242
Target:  5'- cACCAuCG-UGGUAgcGCCGCGACGGgGu -3'
miRNA:   3'- uUGGU-GCuGCCAU--UGGUGCUGCCgUu -5'
1557 3' -55.4 NC_001347.2 + 29894 0.66 0.943799
Target:  5'- --aCACGACGGggaaAAUCACGAaaggcacCGGCAGc -3'
miRNA:   3'- uugGUGCUGCCa---UUGGUGCU-------GCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 168802 0.67 0.939701
Target:  5'- gGACgCGCGcGCGGUGGCCAa-ACGGCc- -3'
miRNA:   3'- -UUG-GUGC-UGCCAUUGGUgcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 88356 0.67 0.939701
Target:  5'- cGCCGCuGGCGGcgcuGCCGCGAgacgacguggaCGGCAc -3'
miRNA:   3'- uUGGUG-CUGCCau--UGGUGCU-----------GCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.