miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 129262 0.7 0.836154
Target:  5'- cAACgAUGACGGcgAACCgcaccaucACGGCGGCGAu -3'
miRNA:   3'- -UUGgUGCUGCCa-UUGG--------UGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 180271 0.7 0.802186
Target:  5'- cGACCGCaGCGGUGGCUggagaagcgcaGCGuCGGCGAg -3'
miRNA:   3'- -UUGGUGcUGCCAUUGG-----------UGCuGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 74120 0.7 0.810924
Target:  5'- cAGCCGCGG-GGUugauACCcaGCGACGGCGu -3'
miRNA:   3'- -UUGGUGCUgCCAu---UGG--UGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 115782 0.69 0.859755
Target:  5'- gAACCcguaGCGGCGGUGGgCACaGCGGCu- -3'
miRNA:   3'- -UUGG----UGCUGCCAUUgGUGcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 117867 0.69 0.859755
Target:  5'- cGACCGCgucaGACGGggcGACCACGucagacgggGCGGCGg -3'
miRNA:   3'- -UUGGUG----CUGCCa--UUGGUGC---------UGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 77124 0.69 0.874497
Target:  5'- uGCCGCGGCGGUAGuuGCGGCagaggGGUu- -3'
miRNA:   3'- uUGGUGCUGCCAUUggUGCUG-----CCGuu -5'
1557 3' -55.4 NC_001347.2 + 106238 0.69 0.852081
Target:  5'- aGGCgGCGGCGGUGGCguUGGCaGCAAu -3'
miRNA:   3'- -UUGgUGCUGCCAUUGguGCUGcCGUU- -5'
1557 3' -55.4 NC_001347.2 + 68676 0.69 0.860512
Target:  5'- --gCACGACGGUAGuagggagauccaugaCGCGGCGGCGc -3'
miRNA:   3'- uugGUGCUGCCAUUg--------------GUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 130868 0.69 0.859755
Target:  5'- cGCCA--ACGGUAAUCacaguACGACGGCAAc -3'
miRNA:   3'- uUGGUgcUGCCAUUGG-----UGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 82583 0.69 0.859755
Target:  5'- cACCACGaACGuGUGaaGCCGCGGCucGGCAc -3'
miRNA:   3'- uUGGUGC-UGC-CAU--UGGUGCUG--CCGUu -5'
1557 3' -55.4 NC_001347.2 + 126891 0.69 0.874497
Target:  5'- cGGCUACGGCGGccGCauCGACGGCAc -3'
miRNA:   3'- -UUGGUGCUGCCauUGguGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 111995 0.69 0.859755
Target:  5'- aAGCUGCGGCGGcuugGGCagcaGCGGCGGCu- -3'
miRNA:   3'- -UUGGUGCUGCCa---UUGg---UGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 84616 0.69 0.852081
Target:  5'- gAGCCGuCGugGGUGGCCucGCGGUGGCu- -3'
miRNA:   3'- -UUGGU-GCugCCAUUGG--UGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 115707 0.68 0.90757
Target:  5'- aAACCACaucuuGAUGGUGAgguCCACcGCGGCAu -3'
miRNA:   3'- -UUGGUG-----CUGCCAUU---GGUGcUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 17196 0.68 0.89501
Target:  5'- gAACCugGA-GGUAAuCCACGACgccuuGGCGGa -3'
miRNA:   3'- -UUGGugCUgCCAUU-GGUGCUG-----CCGUU- -5'
1557 3' -55.4 NC_001347.2 + 82819 0.68 0.89501
Target:  5'- aAACCGCGuC-GUGAgCGCGGCGGCu- -3'
miRNA:   3'- -UUGGUGCuGcCAUUgGUGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 135256 0.68 0.90757
Target:  5'- gGACCACGcccaGGgccagcaAGCCGCGACGGUu- -3'
miRNA:   3'- -UUGGUGCug--CCa------UUGGUGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 208094 0.68 0.881552
Target:  5'- uGCCGCaGAUGGgcGCaC-CGACGGCGGa -3'
miRNA:   3'- uUGGUG-CUGCCauUG-GuGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 208006 0.68 0.913507
Target:  5'- gAACCGCGucUGGUAccGCUACuGugGGCGAu -3'
miRNA:   3'- -UUGGUGCu-GCCAU--UGGUG-CugCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 140531 0.68 0.913507
Target:  5'- cGCCAagGACGGggGUUugGACGGCAAa -3'
miRNA:   3'- uUGGUg-CUGCCauUGGugCUGCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.