miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 196305 1.03 0.010519
Target:  5'- uAACCACGACGGUAACCACGACGGCAAu -3'
miRNA:   3'- -UUGGUGCUGCCAUUGGUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 66784 0.77 0.416936
Target:  5'- cGCC-CGACGGUGgugGCgGCGGCGGCAGu -3'
miRNA:   3'- uUGGuGCUGCCAU---UGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 192047 0.75 0.527795
Target:  5'- cGGCgACGACGGUGGCgGCGAcgacaCGGCGAc -3'
miRNA:   3'- -UUGgUGCUGCCAUUGgUGCU-----GCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 100195 0.74 0.627612
Target:  5'- cGCCGCGGCcucgcccaGGUAGCCGgaGACGGCGGu -3'
miRNA:   3'- uUGGUGCUG--------CCAUUGGUg-CUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 222486 0.73 0.647839
Target:  5'- cGAUgACGACGGaGACCGgGACGGUGAu -3'
miRNA:   3'- -UUGgUGCUGCCaUUGGUgCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 173738 0.73 0.668016
Target:  5'- uGGCgGCGGCGGUGAUCACGAccaCGGUc- -3'
miRNA:   3'- -UUGgUGCUGCCAUUGGUGCU---GCCGuu -5'
1557 3' -55.4 NC_001347.2 + 143000 0.73 0.675054
Target:  5'- cGGCgGCGGCGGUGguggaggagguugcGCCgcaaGCGGCGGCAAc -3'
miRNA:   3'- -UUGgUGCUGCCAU--------------UGG----UGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 101160 0.73 0.678066
Target:  5'- uGACCA--GCGGcuUGGCCGCGGCGGCGc -3'
miRNA:   3'- -UUGGUgcUGCC--AUUGGUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 66844 0.72 0.688079
Target:  5'- cAGCCGCGGCGGUGGCgACaACGGg-- -3'
miRNA:   3'- -UUGGUGCUGCCAUUGgUGcUGCCguu -5'
1557 3' -55.4 NC_001347.2 + 1962 0.72 0.698047
Target:  5'- gGGCCgGCGACGGgGACgGCGGCGGgGAc -3'
miRNA:   3'- -UUGG-UGCUGCCaUUGgUGCUGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 157998 0.72 0.707962
Target:  5'- aGGCUcgACGGCGGcAGCUGCGGCGGUAGg -3'
miRNA:   3'- -UUGG--UGCUGCCaUUGGUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 76632 0.72 0.707962
Target:  5'- cGGCCGCGGCGGaGGCCGaaGCGGCc- -3'
miRNA:   3'- -UUGGUGCUGCCaUUGGUgcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 97915 0.72 0.717813
Target:  5'- gGGCgGCGGCGGUAACaCACGGCGaaucaguuGCGAc -3'
miRNA:   3'- -UUGgUGCUGCCAUUG-GUGCUGC--------CGUU- -5'
1557 3' -55.4 NC_001347.2 + 47129 0.72 0.737292
Target:  5'- gGGCgGCGGCGGcaaUGGCCGCGGCaGCGGg -3'
miRNA:   3'- -UUGgUGCUGCC---AUUGGUGCUGcCGUU- -5'
1557 3' -55.4 NC_001347.2 + 182511 0.71 0.746901
Target:  5'- aAGCCGCGuCGGUca-CAgGACGGCGAa -3'
miRNA:   3'- -UUGGUGCuGCCAuugGUgCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 113072 0.71 0.765817
Target:  5'- aAGCgACGGCGGUGAuuCCGCGggaagaacggACGGCGAc -3'
miRNA:   3'- -UUGgUGCUGCCAUU--GGUGC----------UGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 194907 0.71 0.765817
Target:  5'- -uCCACGcCGGUAgcaagauccGCCugGGCGGCu- -3'
miRNA:   3'- uuGGUGCuGCCAU---------UGGugCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 191992 0.71 0.784269
Target:  5'- cGGCgGCGACGG--ACgGCGGCGGUAAc -3'
miRNA:   3'- -UUGgUGCUGCCauUGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 98050 0.71 0.784269
Target:  5'- cGCCGCGGCGGcAGCgGCcGCGGCu- -3'
miRNA:   3'- uUGGUGCUGCCaUUGgUGcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 135805 0.71 0.784269
Target:  5'- -uCCGCGGCGGgugGACCGgGAagcCGGCGGa -3'
miRNA:   3'- uuGGUGCUGCCa--UUGGUgCU---GCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.